RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CCR1P32246 355 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 PPIL6Q8IXY8 311 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 OSBPL10Q9BXB5 764 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 RANBP17Q9H2T7 1088 aaKnown RBP21.2■□□□□ 0.98
UPF1-207ENST00000599848 KLHL28Q9NXS3 571 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 MAPTP10636 758 aaKnown RBP21.2■□□□□ 0.98
UPF1-207ENST00000599848 HIC1Q14526 733 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 ICA1LQ8NDH6 482 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 MAGEC3Q8TD91 643 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 BLOC1S5Q8TDH9 187 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 ZNF669Q96BR6 464 aaPredicted RBP21.2■□□□□ 0.98
UPF1-207ENST00000599848 TMEM237Q96Q45 408 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 ASB7Q9H672 318 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 PRDM16Q9HAZ2 1276 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 NPHP3-ACAD11A0A0J9YXS1 232 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 PARNO95453 639 aaKnown RBP21.19■□□□□ 0.98
UPF1-207ENST00000599848 RGS9BPQ6ZS82 235 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 SYTL1Q8IYJ3 562 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 SYT15Q9BQS2 421 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 MAP10Q9P2G4 905 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 NEU2Q9Y3R4 380 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 MAN1A2O60476 641 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 THOP1P52888 689 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 C11orf96Q7Z7L8 435 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 TMEM86AQ8N2M4 240 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 HPS3Q969F9 1004 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 A0A1W2PQJ5 194 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 CST8O60676 142 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 CLEC16AQ2KHT3 1053 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 REPS1Q96D71 796 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 OSGEPL1Q9H4B0 414 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 ABCB6Q9NP58 842 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 MSH4O15457 936 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 TNNI3P19429 210 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 TRIM60Q495X7 471 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 CYP2A7P20853 494 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 RGL4Q8IZJ4 473 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 FIBCD1Q8N539 461 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 SPG21Q9NZD8 308 aa21.19■□□□□ 0.98
UPF1-207ENST00000599848 CNTNAP5Q8WYK1 1306 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 GUCY1B2O75343 617 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 YWHAQP27348 245 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 MAGOHP61326 146 aaKnown RBP21.18■□□□□ 0.98
UPF1-207ENST00000599848 CSTF3Q12996 717 aaKnown RBP21.18■□□□□ 0.98
UPF1-207ENST00000599848 GNA13Q14344 377 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 DNPEPQ9ULA0 475 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 CDCA5Q96FF9 252 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 PDZK1P1A8MUH7 402 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 PJA2O43164 708 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 RUNX1T1Q06455 604 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 NBPF12Q5TAG4 269 aaPredicted RBP21.18■□□□□ 0.98
UPF1-207ENST00000599848 SLC30A5Q8TAD4 765 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 SMARCD1Q96GM5 515 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 FBXL5Q9UKA1 691 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 GRAP2O75791 330 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 DNAJB2P25686 324 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 RGMBQ6NW40 437 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 CLYBLQ8N0X4 340 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 JADE3Q92613 823 aa21.18■□□□□ 0.98
UPF1-207ENST00000599848 PFDN1O60925 122 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 CTSEP14091 401 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 MAPK8P45983 427 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 Q4G0T1 1027 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 C16orf62Q7Z3J2 963 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 EPC1Q9H2F5 836 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 EIF2S1P05198 315 aaKnown RBP21.17■□□□□ 0.98
UPF1-207ENST00000599848 ACVR2BQ13705 512 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 PMPCBO75439 489 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 NPY2RP49146 381 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 ACAD10Q6JQN1 1059 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 FAM161BQ96MY7 647 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 PDCD2LQ9BRP1 358 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 C17orf80Q9BSJ5 609 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 DCTN4Q9UJW0 460 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 RNF112Q9ULX5 631 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 CAMSAP1Q5T5Y3 1602 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 CFAP73A6NFT4 308 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 GOLGA8RI6L899 631 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 SERPINF2P08697 491 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 HOXB8P17481 243 aaPredicted RBP21.17■□□□□ 0.98
UPF1-207ENST00000599848 POLR2EP19388 210 aaKnown RBP21.17■□□□□ 0.98
UPF1-207ENST00000599848 BRD2P25440 801 aaKnown RBP21.17■□□□□ 0.98
UPF1-207ENST00000599848 CASP1P29466 404 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 PPP2R1BP30154 601 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 GLRA4Q5JXX5 417 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 FAM171A1Q5VUB5 890 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 C3orf20Q8ND61 904 aa21.17■□□□□ 0.98
UPF1-207ENST00000599848 ROPN1BQ9BZX4 212 aaPredicted RBP21.17■□□□□ 0.98
UPF1-207ENST00000599848 ROPN1Q9HAT0 212 aaPredicted RBP21.17■□□□□ 0.98
UPF1-207ENST00000599848 FGFR2P21802 821 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 SHC4Q6S5L8 630 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 CCDC60Q8IWA6 550 aaPredicted RBP21.16■□□□□ 0.98
UPF1-207ENST00000599848 TMEM159Q96B96 161 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 AGPAT3Q9NRZ7 376 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 PLSCR1O15162 318 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 ADORA2AP29274 412 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 SNX30Q5VWJ9 437 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 DMAP1Q9NPF5 467 aaPredicted RBP21.16■□□□□ 0.98
UPF1-207ENST00000599848 GJB4Q9NTQ9 266 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 ADGRG1Q9Y653 693 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms