RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 WDR49Q8IV35 697 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 IQUBQ8NA54 791 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 OR5B17Q8NGF7 314 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 MYCBPAPQ8TBZ2 947 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 NOC3LQ8WTT2 800 aaKnown RBP13.35□□□□□ -0.27
TRIM28-212ENST00000597995 PCED1BQ96HM7 432 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 C8orf48Q96LL4 319 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 NUP205Q92621 2012 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 A0A0A0MRY4 1105 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 TACC1O75410 805 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 ALDH1A2O94788 518 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 PROS1P07225 676 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 PDGFRBP09619 1106 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 NOVA1P51513 510 aaKnown RBP13.34□□□□□ -0.27
TRIM28-212ENST00000597995 USP46P62068 366 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 ASIC1P78348 528 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 CYP27A1Q02318 531 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 LMBRD2Q68DH5 695 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-212ENST00000597995 ANO7Q6IWH7 933 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 GRAMD1CQ8IYS0 662 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 MDGA1Q8NFP4 955 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 OLIG1Q8TAK6 271 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 MMS19Q96T76 1030 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 TPSD1Q9BZJ3 242 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 LRRC27Q9C0I9 530 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 RNF38Q9H0F5 515 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 BLZF1Q9H2G9 400 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 CFAP45Q9UL16 551 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 INVSQ9Y283 1065 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 HELZP42694 1942 aaKnown RBP13.34□□□□□ -0.27
TRIM28-212ENST00000597995 THADAQ6YHU6 1953 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 PTPRJQ12913 1337 aa13.34□□□□□ -0.27
TRIM28-212ENST00000597995 CHD6Q8TD26 2715 aa13.33□□□□□ -0.27
TRIM28-212ENST00000597995 TGFB1I1O43294 461 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 OAS1P00973 400 aaKnown RBP13.33□□□□□ -0.28
TRIM28-212ENST00000597995 CYP17A1P05093 508 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 CEACAM1P13688 526 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 CSRP1P21291 193 aaKnown RBP13.33□□□□□ -0.28
TRIM28-212ENST00000597995 GNL1P36915 607 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-212ENST00000597995 SEC13P55735 322 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 CUL4BQ13620 913 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 DHCR24Q15392 516 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 TDRD10Q5VZ19 366 aaKnown RBP13.33□□□□□ -0.28
TRIM28-212ENST00000597995 TRAPPC11Q7Z392 1133 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 CYP2U1Q7Z449 544 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 FILIP1Q7Z7B0 1213 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 DDX42Q86XP3 938 aaKnown RBP eCLIP13.33□□□□□ -0.28
TRIM28-212ENST00000597995 CBWD2Q8IUF1 395 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 CCDC33Q8N5R6 958 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 ZNF507Q8TCN5 953 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 SLITRK1Q96PX8 696 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 PNKPQ96T60 521 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 SNX25Q9H3E2 840 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 TMEM9BQ9NQ34 198 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 SERTAD1Q9UHV2 236 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 EVLQ9UI08 416 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-212ENST00000597995 PTPRDP23468 1912 aa13.33□□□□□ -0.28
TRIM28-212ENST00000597995 CEP295Q9C0D2 2601 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 ZFHX4Q86UP3 3567 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 F8VP50 259 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 CDX4O14627 284 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-212ENST00000597995 ACTN4O43707 911 aaKnown RBP13.32□□□□□ -0.28
TRIM28-212ENST00000597995 KLRC4O43908 158 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 CST3P01034 146 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-212ENST00000597995 APODP05090 189 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 BCKDHBP21953 392 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 P2RY2P41231 377 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 TNFRSF4P43489 277 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 AFMP43652 599 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 AMPD3Q01432 767 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 TAF10Q12962 218 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 BYSLQ13895 437 aaKnown RBP13.32□□□□□ -0.28
TRIM28-212ENST00000597995 MDH1BQ5I0G3 518 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 SPDYCQ5MJ68 293 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 EOGTQ5NDL2 527 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 FAM26FQ5R3K3 315 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 SH3PXD2AQ5TCZ1 1133 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 RHBDF2Q6PJF5 856 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 UNC13DQ70J99 1090 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 SCFD1Q8WVM8 642 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 MRPL45Q9BRJ2 306 aaKnown RBP13.32□□□□□ -0.28
TRIM28-212ENST00000597995 ELOVL4Q9GZR5 314 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 MAGEF1Q9HAY2 307 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 POLMQ9NP87 494 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-212ENST00000597995 HSPBP1Q9NZL4 362 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 TBC1D14Q9P2M4 693 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 CPQQ9Y646 472 aa13.32□□□□□ -0.28
TRIM28-212ENST00000597995 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-212ENST00000597995 A0A1B0GVL5 298 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 E2F8A0AVK6 867 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-212ENST00000597995 TNFRSF10BO14763 440 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 GIPC1O14908 333 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 EIF3DO15371 548 aaKnown RBP eCLIP13.31□□□□□ -0.28
TRIM28-212ENST00000597995 KAT7O95251 611 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 STAU1O95793 577 aaKnown RBP13.31□□□□□ -0.28
TRIM28-212ENST00000597995 ADH1CP00326 375 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 CHRM1P11229 460 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-212ENST00000597995 PTPN1P18031 435 aaKnown RBP13.31□□□□□ -0.28
TRIM28-212ENST00000597995 GRIA2P42262 883 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms