RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 PDZD8Q8NEN9 1154 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 SLC2A14Q8TDB8 520 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 SH3RF2Q8TEC5 729 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 OSCP1Q8WVF1 389 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 NT5C1AQ9BXI3 368 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 SEMA4AQ9H3S1 761 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 HPS4Q9NQG7 708 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 RAB20Q9NX57 234 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 ARMCX3Q9UH62 379 aaPredicted RBP16.2■□□□□ 0.18
TRIM28-203ENST00000593582 ARHGAP26Q9UNA1 814 aa16.2■□□□□ 0.18
TRIM28-203ENST00000593582 TRIM49BA6NDI0 452 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 PRR23AA6NEV1 266 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 CD58P19256 250 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 PPP2R5DQ14738 602 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 TXNDC11Q6PKC3 985 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 TTC39CQ8N584 583 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 RIN3Q8TB24 985 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 OVCA2Q8WZ82 227 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 FBXO32Q969P5 355 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 FAXDC2Q96IV6 333 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 FAM49BQ9NUQ9 324 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 DUS2Q9NX74 493 aaKnown RBP16.19■□□□□ 0.18
TRIM28-203ENST00000593582 CHMP5Q9NZZ3 219 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 R4GN57 208 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 PTPRDP23468 1912 aa16.19■□□□□ 0.18
TRIM28-203ENST00000593582 DENND4CQ5VZ89 1909 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 CILPO75339 1184 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 FAM200BP0CF97 657 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 ARSAP15289 507 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 TCF3P15923 654 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 IFNAR2P48551 515 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 SLC5A3P53794 718 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 USP4Q13107 963 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 PON2Q15165 354 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 DGKKQ5KSL6 1271 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 KLHL10Q6JEL2 608 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 MAMSTRQ6ZN01 415 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 ASCL5Q7RTU5 278 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 CPA6Q8N4T0 437 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 SCAMP5Q8TAC9 235 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 SEMA4DQ92854 862 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 ATP2A3Q93084 1043 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 CYFIP2Q96F07 1278 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 TWNKQ96RR1 684 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 HNRNPABQ99729 332 aaKnown RBP16.18■□□□□ 0.18
TRIM28-203ENST00000593582 METTL14Q9HCE5 456 aaKnown RBP16.18■□□□□ 0.18
TRIM28-203ENST00000593582 COMMD8Q9NX08 183 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 OBSL1O75147 1896 aa16.18■□□□□ 0.18
TRIM28-203ENST00000593582 OTOL1A6NHN0 477 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-203ENST00000593582 TNFRSF10BO14763 440 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 OAS1P00973 400 aaKnown RBP16.17■□□□□ 0.18
TRIM28-203ENST00000593582 CD44P16070 742 aaKnown RBP16.17■□□□□ 0.18
TRIM28-203ENST00000593582 ADORA2BP29275 332 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 CCR3P51677 355 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 MAP3K7CLP57077 242 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 UBE2HP62256 183 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 SLC7A9P82251 487 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 CBWD6Q4V339 395 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 CBWD3Q5JTY5 395 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 CBWD5Q5RIA9 395 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 ATRIPQ8WXE1 791 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 EXOC4Q96A65 974 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 CEP63Q96MT8 703 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 SMOQ99835 787 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 RNF38Q9H0F5 515 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 FBXO44Q9H4M3 255 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 FAM124BQ9H5Z6 455 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-203ENST00000593582 ECT2Q9H8V3 914 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 CSNK1G1Q9HCP0 422 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 PRMT8Q9NR22 394 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-203ENST00000593582 RBM12Q9NTZ6 932 aaKnown RBP16.17■□□□□ 0.18
TRIM28-203ENST00000593582 IL37Q9NZH6 218 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 CHORDC1Q9UHD1 332 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-203ENST00000593582 PCDHGA2Q9Y5H1 932 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 WNT6Q9Y6F9 365 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 CFAP54Q96N23 3096 aa16.17■□□□□ 0.18
TRIM28-203ENST00000593582 GREB1Q4ZG55 1949 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 BICDL2A1A5D9 508 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 LEFTY2O00292 366 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 BIN1O00499 593 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 BEST1O76090 585 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 OLFM2O95897 454 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 LMNAP02545 664 aaKnown RBP16.16■□□□□ 0.18
TRIM28-203ENST00000593582 BMP6P22004 513 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 ANP32AP39687 249 aaKnown RBP16.16■□□□□ 0.18
TRIM28-203ENST00000593582 GRSF1Q12849 480 aaKnown RBP eCLIP16.16■□□□□ 0.18
TRIM28-203ENST00000593582 NR1H3Q13133 447 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 CCINQ13939 588 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 MORC3Q14149 939 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 EML3Q32P44 896 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 HECTD3Q5T447 861 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 SNX30Q5VWJ9 437 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 TSSK4Q6SA08 328 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 FILIP1Q7Z7B0 1213 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 SYNPOQ8N3V7 929 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 SPEM1Q8N4L4 309 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 ZMIZ2Q8NF64 920 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 WHAMMQ8TF30 809 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 NELFBQ8WX92 580 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 SLC35C1Q96A29 364 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms