RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 LRRC27Q9C0I9 530 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 DPEP3Q9H4B8 488 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 VRTNQ9H8Y1 702 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 IL37Q9NZH6 218 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 TRPM5Q9NZQ8 1165 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 MMP17Q9ULZ9 603 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 UBE4BO95155 1302 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 NBEAQ8NFP9 2946 aa12.52□□□□□ -0.41
CLIP3-204ENST00000590559 MYH10P35580 1976 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 SPTLC2O15270 562 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 RHOBTB1O94844 696 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 KCNK5O95279 499 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 PTPN1P18031 435 aaKnown RBP12.51□□□□□ -0.41
CLIP3-204ENST00000590559 CLDN10P78369 228 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 CYP27A1Q02318 531 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 MDH1BQ5I0G3 518 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 FAM26FQ5R3K3 315 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 SNX30Q5VWJ9 437 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 RHBDF2Q6PJF5 856 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 PAQR9Q6ZVX9 377 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 FILIP1Q7Z7B0 1213 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 SFTPA1Q8IWL2 248 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 PHTF2Q8N3S3 785 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 PLEKHO2Q8TD55 490 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 TMEM174Q8WUU8 243 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 CNOT6LQ96LI5 555 aaKnown RBP12.51□□□□□ -0.41
CLIP3-204ENST00000590559 MMS19Q96T76 1030 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 DUSP9Q99956 384 aaKnown RBP12.51□□□□□ -0.41
CLIP3-204ENST00000590559 B3GNT5Q9BYG0 378 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 EHD2Q9NZN4 543 aa12.51□□□□□ -0.41
CLIP3-204ENST00000590559 PI4KAP42356 2102 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 LNP1A1A4G5 178 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 FAM92AA1XBS5 289 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 TNFRSF10BO14763 440 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 CLIC2O15247 247 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 YEATS4O95619 227 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 CAVIN2O95810 425 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 DLATP10515 647 aaKnown RBP12.5□□□□□ -0.41
CLIP3-204ENST00000590559 ANXA13P27216 316 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 ATICP31939 592 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 KIR2DL1P43626 348 aaPredicted RBP12.5□□□□□ -0.41
CLIP3-204ENST00000590559 SLC6A11P48066 632 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 MRPS21P82921 87 aaKnown RBP12.5□□□□□ -0.41
CLIP3-204ENST00000590559 AMPD3Q01432 767 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 TAF10Q12962 218 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 STK38Q15208 465 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 DHCR24Q15392 516 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 ELF2Q15723 593 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 CRY1Q16526 586 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 ST3GAL2Q16842 350 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 WDR72Q3MJ13 1102 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 TMEM92Q6UXU6 159 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 UNC13DQ70J99 1090 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 C11orf74Q86VG3 221 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 C12orf40Q86WS4 652 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 IL17RCQ8NAC3 791 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 XXYLT1Q8NBI6 393 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 RDH13Q8NBN7 331 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 MDGA1Q8NFP4 955 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 TSTD1Q8NFU3 115 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 OVCA2Q8WZ82 227 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 ZNF518BQ9C0D4 1074 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 ELOVL4Q9GZR5 314 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 ANGPTL2Q9UKU9 493 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 WASF3Q9UPY6 502 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 R3HCC1Q9Y3T6 440 aaKnown RBP12.5□□□□□ -0.41
CLIP3-204ENST00000590559 CPQQ9Y646 472 aa12.5□□□□□ -0.41
CLIP3-204ENST00000590559 TULP1O00294 542 aaPredicted RBP12.49□□□□□ -0.41
CLIP3-204ENST00000590559 CLDN5O00501 218 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 CUTAO60888 179 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 ZDHHC11BP0C7U3 371 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 TNNI1P19237 187 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 BCKDHBP21953 392 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 DGKEP52429 567 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 MYL6P60660 151 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 ASIC1P78348 528 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 PSMD2Q13200 908 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 HSF5Q4G112 596 aaPredicted RBP12.49□□□□□ -0.41
CLIP3-204ENST00000590559 USP39Q53GS9 565 aaKnown RBP12.49□□□□□ -0.41
CLIP3-204ENST00000590559 C2orf27AQ580R0 203 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 TDRD10Q5VZ19 366 aaKnown RBP12.49□□□□□ -0.41
CLIP3-204ENST00000590559 RNF43Q68DV7 783 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 NUP93Q8N1F7 819 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 IQUBQ8NA54 791 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 B3GALNT2Q8NCR0 500 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 TTC16Q8NEE8 873 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 OR6B3Q8NGW1 331 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 DHX58Q96C10 678 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 FNBP1Q96RU3 617 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 EDEM2Q9BV94 578 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 TPSD1Q9BZJ3 242 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 SNX25Q9H3E2 840 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 MAGEF1Q9HAY2 307 aa12.49□□□□□ -0.41
CLIP3-204ENST00000590559 CGNQ9P2M7 1197 aaKnown RBP12.49□□□□□ -0.41
CLIP3-204ENST00000590559 TFIP11Q9UBB9 837 aaKnown RBP12.49□□□□□ -0.41
CLIP3-204ENST00000590559 ASCC3Q8N3C0 2202 aaKnown RBP12.49□□□□□ -0.41
CLIP3-204ENST00000590559 PVALEFA0A1B0GWK0 134 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 E2F8A0AVK6 867 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 K7ELQ4 463 aaPredicted RBP12.48□□□□□ -0.41
CLIP3-204ENST00000590559 CDX4O14627 284 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms