RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 SLC30A4O14863 429 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 ACTN4O43707 911 aaKnown RBP19.91■□□□□ 0.78
CLN3-218ENST00000565688 KLRC4O43908 158 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 CLSTN1O94985 981 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 RTN3O95197 1032 aaPredicted RBP19.91■□□□□ 0.78
CLN3-218ENST00000565688 APBB3O95704 486 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 ABL1P00519 1130 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 MYL1P05976 194 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 P4HA1P13674 534 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 CASP4P49662 377 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 CACNA2D1P54289 1103 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 STK4Q13043 487 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 NCOA4Q13772 614 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 PKP1Q13835 747 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 ZNF667Q5HYK9 610 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 DDX42Q86XP3 938 aaKnown RBP eCLIP19.91■□□□□ 0.78
CLN3-218ENST00000565688 NUP93Q8N1F7 819 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 PDZD8Q8NEN9 1154 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 OVCA2Q8WZ82 227 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 RNF38Q9H0F5 515 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 DMAC2Q9NW81 257 aa19.91■□□□□ 0.78
CLN3-218ENST00000565688 HELZP42694 1942 aaKnown RBP19.91■□□□□ 0.78
CLN3-218ENST00000565688 SPTBN2O15020 2390 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 LRRIQ3A6PVS8 624 aaPredicted RBP19.9■□□□□ 0.78
CLN3-218ENST00000565688 PDXKO00764 312 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 AXIN1O15169 862 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 OAS1P00973 400 aaKnown RBP19.9■□□□□ 0.78
CLN3-218ENST00000565688 CMA1P23946 247 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 YWHAQP27348 245 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 RAP1GAPP47736 663 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 ZXDBP98169 803 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 KIAA0895Q8NCT3 520 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 PLEKHO2Q8TD55 490 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 EZH1Q92800 747 aaPredicted RBP19.9■□□□□ 0.78
CLN3-218ENST00000565688 ZC3H10Q96K80 434 aaKnown RBP19.9■□□□□ 0.78
CLN3-218ENST00000565688 HHIPQ96QV1 700 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 SMYD3Q9H7B4 428 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 TMEM30AQ9NV96 361 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 EBF1Q9UH73 591 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 CPQQ9Y646 472 aa19.9■□□□□ 0.78
CLN3-218ENST00000565688 DCDC2BA2VCK2 349 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 CLDN5O00501 218 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 EPN2O95208 641 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 C4BPAP04003 597 aaKnown RBP19.89■□□□□ 0.77
CLN3-218ENST00000565688 RPN1P04843 607 aaKnown RBP19.89■□□□□ 0.77
CLN3-218ENST00000565688 CDH8P55286 799 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 DMC1Q14565 340 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 SGSM1Q2NKQ1 1148 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 KMT5BQ4FZB7 885 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 FILIP1Q7Z7B0 1213 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 KBTBD6Q86V97 674 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 ADGRG2Q8IZP9 1017 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 TAF4BQ92750 862 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 SMARCD1Q96GM5 515 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 MED10Q9BTT4 135 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 ARRDC1-AS1Q9H2J1 176 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 KCTD10Q9H3F6 313 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 DMAP1Q9NPF5 467 aaPredicted RBP19.89■□□□□ 0.77
CLN3-218ENST00000565688 SMPD4Q9NXE4 827 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 PCDHGA5Q9Y5G8 931 aa19.89■□□□□ 0.77
CLN3-218ENST00000565688 KIF20AO95235 890 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 NR3C1P04150 777 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 ZNF806P0C7X5 589 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 PFKFB1P16118 471 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 OPRD1P41143 372 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 IFRD2Q12894 506 aaPredicted RBP19.88■□□□□ 0.77
CLN3-218ENST00000565688 FAM35AQ86V20 835 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 TMC2Q8TDI7 906 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 FBXO32Q969P5 355 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 COMMD8Q9NX08 183 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 CFAP97Q9P2B7 532 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 TBC1D14Q9P2M4 693 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 FRMD4BQ9Y2L6 1034 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 RALGAPA1Q6GYQ0 2036 aa19.88■□□□□ 0.77
CLN3-218ENST00000565688 SPAG17Q6Q759 2223 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 ATG2BQ96BY7 2078 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 IKBKBO14920 756 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 VNN1O95497 513 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 ADH1CP00326 375 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 CYP17A1P05093 508 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 MBL2P11226 248 aaPredicted RBP19.87■□□□□ 0.77
CLN3-218ENST00000565688 EIF2DP41214 584 aaKnown RBP19.87■□□□□ 0.77
CLN3-218ENST00000565688 DHCR24Q15392 516 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 SNX30Q5VWJ9 437 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 SCARA5Q6ZMJ2 495 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 C12orf50Q8NA57 414 aaPredicted RBP19.87■□□□□ 0.77
CLN3-218ENST00000565688 SPRYD3Q8NCJ5 442 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 USP33Q8TEY7 942 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 DDX1Q92499 740 aaKnown RBP19.87■□□□□ 0.77
CLN3-218ENST00000565688 CCDC47Q96A33 483 aaKnown RBP19.87■□□□□ 0.77
CLN3-218ENST00000565688 SPATA32Q96LK8 384 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 KCNK16Q96T55 309 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 POLR3BQ9NW08 1133 aaPredicted RBP19.87■□□□□ 0.77
CLN3-218ENST00000565688 IL37Q9NZH6 218 aa19.87■□□□□ 0.77
CLN3-218ENST00000565688 A0A1B0GVL5 298 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 E2F8A0AVK6 867 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 K7EQS6 105 aa19.86■□□□□ 0.77
CLN3-218ENST00000565688 CALUO43852 315 aaPredicted RBP19.86■□□□□ 0.77
CLN3-218ENST00000565688 TRIM21P19474 475 aaKnown RBP19.86■□□□□ 0.77
CLN3-218ENST00000565688 TUBP50607 506 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms