RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CCDC26Q8TAB7 109 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 ACDQ96AP0 544 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 HHIPQ96QV1 700 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 NXF1Q9UBU9 619 aaKnown RBP18.23■□□□□ 0.51
CLN3-216ENST00000565316 CHD8Q9HCK8 2581 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 ATG2BQ96BY7 2078 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 A8MXQ7 604 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 ACTN4O43707 911 aaKnown RBP18.22■□□□□ 0.51
CLN3-216ENST00000565316 APBB3O95704 486 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 ZNF806P0C7X5 589 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 CCDC192P0DO97 292 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 CASP4P49662 377 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 LIMK1P53667 647 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 DMC1Q14565 340 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 PLA2G2CQ5R387 149 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 SLC9A9Q8IVB4 645 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 GRAMD1CQ8IYS0 662 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 ADGRG2Q8IZP9 1017 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 PARD3BQ8TEW8 1205 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 ARRDC1-AS1Q9H2J1 176 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 IL37Q9NZH6 218 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 CFAP45Q9UL16 551 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 PCDHGA5Q9Y5G8 931 aa18.22■□□□□ 0.51
CLN3-216ENST00000565316 SPAG17Q6Q759 2223 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 HELZP42694 1942 aaKnown RBP18.21■□□□□ 0.51
CLN3-216ENST00000565316 LRRIQ3A6PVS8 624 aaPredicted RBP18.21■□□□□ 0.51
CLN3-216ENST00000565316 K7EQS6 105 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 CLDN5O00501 218 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 SLC9A3R1O14745 358 aaPredicted RBP18.21■□□□□ 0.51
CLN3-216ENST00000565316 PHACTR2O75167 634 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 C4BPAP04003 597 aaKnown RBP18.21■□□□□ 0.51
CLN3-216ENST00000565316 STK4Q13043 487 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 PSMD2Q13200 908 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 PLK5Q496M5 336 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 FILIP1Q7Z7B0 1213 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 HSCBQ8IWL3 235 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 NUP93Q8N1F7 819 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 USP33Q8TEY7 942 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 OVCA2Q8WZ82 227 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 PAGE5Q96GU1 130 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 SLITRK1Q96PX8 696 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 SMYD3Q9H7B4 428 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 SERTAD1Q9UHV2 236 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 CPQQ9Y646 472 aa18.21■□□□□ 0.51
CLN3-216ENST00000565316 CNOT1A5YKK6 2376 aaKnown RBP18.2■□□□□ 0.5
CLN3-216ENST00000565316 RTN3O95197 1032 aaPredicted RBP18.2■□□□□ 0.5
CLN3-216ENST00000565316 VNN1O95497 513 aa18.2■□□□□ 0.5
CLN3-216ENST00000565316 CYP17A1P05093 508 aa18.2■□□□□ 0.5
CLN3-216ENST00000565316 YWHAQP27348 245 aa18.2■□□□□ 0.5
CLN3-216ENST00000565316 CDH8P55286 799 aa18.2■□□□□ 0.5
CLN3-216ENST00000565316 DNM1Q05193 864 aaKnown RBP18.2■□□□□ 0.5
CLN3-216ENST00000565316 NCOA4Q13772 614 aa18.2■□□□□ 0.5
CLN3-216ENST00000565316 PKP1Q13835 747 aa18.2■□□□□ 0.5
CLN3-216ENST00000565316 SF3A2Q15428 464 aaKnown RBP18.2■□□□□ 0.5
CLN3-216ENST00000565316 ZNF699Q32M78 642 aa18.2■□□□□ 0.5
CLN3-216ENST00000565316 SNX30Q5VWJ9 437 aa18.2■□□□□ 0.5
CLN3-216ENST00000565316 PAQR9Q6ZVX9 377 aa18.2■□□□□ 0.5
CLN3-216ENST00000565316 CEP57L1Q8IYX8 460 aa18.2■□□□□ 0.5
CLN3-216ENST00000565316 KIAA0895Q8NCT3 520 aa18.2■□□□□ 0.5
CLN3-216ENST00000565316 DUSP15Q9H1R2 295 aaPredicted RBP18.2■□□□□ 0.5
CLN3-216ENST00000565316 KCTD10Q9H3F6 313 aa18.2■□□□□ 0.5
CLN3-216ENST00000565316 RALGAPA1Q6GYQ0 2036 aa18.19■□□□□ 0.5
CLN3-216ENST00000565316 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.19■□□□□ 0.5
CLN3-216ENST00000565316 TNFRSF10BO14763 440 aa18.19■□□□□ 0.5
CLN3-216ENST00000565316 ADRB1P08588 477 aa18.19■□□□□ 0.5
CLN3-216ENST00000565316 CHRM1P11229 460 aaPredicted RBP18.19■□□□□ 0.5
CLN3-216ENST00000565316 BIRC3Q13489 604 aa18.19■□□□□ 0.5
CLN3-216ENST00000565316 DHCR24Q15392 516 aa18.19■□□□□ 0.5
CLN3-216ENST00000565316 ZNF667Q5HYK9 610 aa18.19■□□□□ 0.5
CLN3-216ENST00000565316 PPM1JQ5JR12 505 aa18.19■□□□□ 0.5
CLN3-216ENST00000565316 DDX42Q86XP3 938 aaKnown RBP eCLIP18.19■□□□□ 0.5
CLN3-216ENST00000565316 PDZD8Q8NEN9 1154 aa18.19■□□□□ 0.5
CLN3-216ENST00000565316 KCNK16Q96T55 309 aa18.19■□□□□ 0.5
CLN3-216ENST00000565316 SMPD4Q9NXE4 827 aa18.19■□□□□ 0.5
CLN3-216ENST00000565316 CFAP97Q9P2B7 532 aa18.19■□□□□ 0.5
CLN3-216ENST00000565316 ATP8B3O60423 1300 aa18.19■□□□□ 0.5
CLN3-216ENST00000565316 KMT2BQ9UMN6 2715 aaPredicted RBP18.18■□□□□ 0.5
CLN3-216ENST00000565316 LAMA1P25391 3075 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 KIAA1549LQ6ZVL6 1849 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 A0A0A0MRY4 1105 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 FAM92AA1XBS5 289 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 PDXKO00764 312 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 TM4SF5O14894 197 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 ABL1P00519 1130 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 HSP90AA1P07900 732 aaKnown RBP18.18■□□□□ 0.5
CLN3-216ENST00000565316 EIF2DP41214 584 aaKnown RBP18.18■□□□□ 0.5
CLN3-216ENST00000565316 KMT5BQ4FZB7 885 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 RHBDF2Q6PJF5 856 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 FAM35AQ86V20 835 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 DDX1Q92499 740 aaKnown RBP18.18■□□□□ 0.5
CLN3-216ENST00000565316 TNIP3Q96KP6 325 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 ZFRQ96KR1 1074 aaKnown RBP18.18■□□□□ 0.5
CLN3-216ENST00000565316 DUSP9Q99956 384 aaKnown RBP18.18■□□□□ 0.5
CLN3-216ENST00000565316 SDCBP2Q9H190 292 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 EXOC1Q9NV70 894 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 COMMD8Q9NX08 183 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 USP25Q9UHP3 1055 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 EML5Q05BV3 1969 aa18.18■□□□□ 0.5
CLN3-216ENST00000565316 MYO16Q9Y6X6 1858 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 E2F8A0AVK6 867 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms