RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MRPL45Q9BRJ2 306 aaKnown RBP17.52■□□□□ 0.4
CLN3-208ENST00000561505 PANK2Q9BZ23 570 aa17.52■□□□□ 0.4
CLN3-208ENST00000561505 TRIM9Q9C026 710 aa17.52■□□□□ 0.4
CLN3-208ENST00000561505 FAM92AA1XBS5 289 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 CEACAM1P13688 526 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 PTPN1P18031 435 aaKnown RBP17.51■□□□□ 0.39
CLN3-208ENST00000561505 GNL1P36915 607 aaPredicted RBP17.51■□□□□ 0.39
CLN3-208ENST00000561505 TNFRSF4P43489 277 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 CACNA2D1P54289 1103 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 PSMD2Q13200 908 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 PSMD6Q15008 389 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 C2orf27AQ580R0 203 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 DAB2IPQ5VWQ8 1189 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 PEAR1Q5VY43 1037 aaPredicted RBP17.51■□□□□ 0.39
CLN3-208ENST00000561505 PSAPL1Q6NUJ1 521 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 KCNV2Q8TDN2 545 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 OVCA2Q8WZ82 227 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 OTUB2Q96DC9 234 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 INTS4Q96HW7 963 aaKnown RBP17.51■□□□□ 0.39
CLN3-208ENST00000561505 ZFRQ96KR1 1074 aaKnown RBP17.51■□□□□ 0.39
CLN3-208ENST00000561505 PNKPQ96T60 521 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 TPSD1Q9BZJ3 242 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 LRRC27Q9C0I9 530 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 XYLT2Q9H1B5 865 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 CUEDC2Q9H467 287 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 VRTNQ9H8Y1 702 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 CPQQ9Y646 472 aa17.51■□□□□ 0.39
CLN3-208ENST00000561505 ZZEF1O43149 2961 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 E2F8A0AVK6 867 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 TNFRSF10BO14763 440 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 GIPC1O14908 333 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 KHNYNO15037 678 aaKnown RBP17.5■□□□□ 0.39
CLN3-208ENST00000561505 KAT7O95251 611 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 ANXA13P27216 316 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 SLC6A11P48066 632 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 TAF10Q12962 218 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 SNRNP35Q16560 246 aaKnown RBP17.5■□□□□ 0.39
CLN3-208ENST00000561505 ANO7Q6IWH7 933 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 DDX42Q86XP3 938 aaKnown RBP eCLIP17.5■□□□□ 0.39
CLN3-208ENST00000561505 SFTPA1Q8IWL2 248 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 ETFBKMTQ8IXQ9 262 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 C12orf56Q8IXR9 622 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 KDF1Q8NAX2 398 aaPredicted RBP17.5■□□□□ 0.39
CLN3-208ENST00000561505 LINC00301Q8NCQ3 95 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 ZNF516Q92618 1163 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 HPS3Q969F9 1004 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 FNBP1Q96RU3 617 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 CGRRF1Q99675 332 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 ELOVL4Q9GZR5 314 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 ZSCAN16Q9H4T2 348 aaPredicted RBP17.5■□□□□ 0.39
CLN3-208ENST00000561505 UPF2Q9HAU5 1272 aaKnown RBP17.5■□□□□ 0.39
CLN3-208ENST00000561505 AGPAT3Q9NRZ7 376 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 TBC1D14Q9P2M4 693 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 MTMR6Q9Y217 621 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 R3HCC1Q9Y3T6 440 aaKnown RBP17.5■□□□□ 0.39
CLN3-208ENST00000561505 PLXND1Q9Y4D7 1925 aa17.5■□□□□ 0.39
CLN3-208ENST00000561505 SGK1O00141 431 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 ZDHHC11BP0C7U3 371 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 GBP1P32455 592 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 GRIA2P42262 883 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 NOVA1P51513 510 aaKnown RBP17.49■□□□□ 0.39
CLN3-208ENST00000561505 IRX4P78413 519 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 CYP27A1Q02318 531 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 MAP7D1Q3KQU3 841 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 MDH1BQ5I0G3 518 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 TDRD10Q5VZ19 366 aaKnown RBP17.49■□□□□ 0.39
CLN3-208ENST00000561505 PAQR9Q6ZVX9 377 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 C12orf40Q86WS4 652 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 PDZD8Q8NEN9 1154 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 TMEM174Q8WUU8 243 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 SLITRK1Q96PX8 696 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 MMS19Q96T76 1030 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 B3GNT5Q9BYG0 378 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 TMEM9BQ9NQ34 198 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 INVSQ9Y283 1065 aa17.49■□□□□ 0.39
CLN3-208ENST00000561505 THADAQ6YHU6 1953 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 UPK3BL1B0FP48 263 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 PATE3B3GLJ2 98 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 UPK3BL2E5RIL1 263 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 ADAM23O75077 832 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 ALDH1A2O94788 518 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 RTN3O95197 1032 aaPredicted RBP17.48■□□□□ 0.39
CLN3-208ENST00000561505 ATICP31939 592 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 TUBP50607 506 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 CLDN10P78369 228 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 CEBPZQ03701 1054 aaKnown RBP17.48■□□□□ 0.39
CLN3-208ENST00000561505 CYP24A1Q07973 514 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 BMT2Q1RMZ1 405 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 WDR72Q3MJ13 1102 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 CYP2U1Q7Z449 544 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 NUP93Q8N1F7 819 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 CCDC33Q8N5R6 958 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 ALLCQ8N6M5 410 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 TXNDC5Q8NBS9 432 aaKnown RBP17.48■□□□□ 0.39
CLN3-208ENST00000561505 C7orf25Q9BPX7 421 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 ZNF518BQ9C0D4 1074 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 SNX25Q9H3E2 840 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 DPEP3Q9H4B8 488 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 CD248Q9HCU0 757 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 COMMD8Q9NX08 183 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms