RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 TAF2Q6P1X5 1199 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 MRPL48Q96GC5 212 aaKnown RBP13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 PNKPQ96T60 521 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 CINPQ9BW66 212 aaPredicted RBP13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 GANQ9H2C0 597 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 WDCPQ9H6R7 721 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 KCNH7Q9NS40 1196 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 KRT84Q9NSB2 600 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 V9GYQ6 96 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 E2F8A0AVK6 867 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 CLPTM1O96005 669 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 TFE3P19532 575 aaPredicted RBP13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 MGAT5BQ3V5L5 792 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 VPS33AQ96AX1 596 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 SEPT5Q99719 369 aaPredicted RBP13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 KCTD10Q9H3F6 313 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 DDIT4Q9NX09 232 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 CDC42BPGQ6DT37 1551 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 ARHGEF40Q8TER5 1519 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 FOXN3O00409 490 aaPredicted RBP13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 PON1P27169 355 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 CCNG2Q16589 344 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 ACOT9Q9Y305 439 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 SKAP2O75563 359 aaPredicted RBP13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 SLC11A2P49281 568 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 PKN2Q16513 984 aaKnown RBP13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 EPC2Q52LR7 807 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 EXD1Q8NHP7 514 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 PI4K2AQ9BTU6 479 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 KLHL4Q9C0H6 718 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 POLE3Q9NRF9 147 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 RNF112Q9ULX5 631 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 C6orf222P0C671 652 aaPredicted RBP13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 MTM1Q13496 603 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 OOSP2Q86WS3 158 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 EPS8L3Q8TE67 593 aaKnown RBP13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 ATP8B4Q8TF62 1192 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 DOLKQ9UPQ8 538 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 AXIN2Q9Y2T1 843 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 SESN1Q9Y6P5 492 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 SPACA6W5XKT8 324 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 M0QYT0 321 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 ERVK-24P63145 666 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 MYBPC2Q14324 1141 aa13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 CENPLQ8N0S6 344 aaPredicted RBP13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 CNOT7Q9UIV1 285 aaKnown RBP13.65□□□□□ -0.22
CSPG4P11-201ENST00000560634 HECW2Q9P2P5 1572 aa13.65□□□□□ -0.23
CSPG4P11-201ENST00000560634 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 GHRP10912 638 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 PRKCQQ04759 706 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 KCNMA1Q12791 1236 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 ZNF177Q13360 481 aaPredicted RBP13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 MKRN4PQ13434 485 aaPredicted RBP13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 ITGA9Q13797 1035 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 CYP51A1Q16850 503 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 C10orf120Q5SQS8 335 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 ARMC6Q6NXE6 501 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 ZBTB49Q6ZSB9 765 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 SHCBP1LQ9BZQ2 653 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 RUVBL2Q9Y230 463 aaKnown RBP13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 SARSP49591 514 aaKnown RBP13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 NFYCQ13952 458 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 CYP4A22Q5TCH4 519 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 CDC42EP5Q6NZY7 148 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 CYP4Z1Q86W10 505 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 TMC2Q8TDI7 906 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 CAVIN3Q969G5 261 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 PAFAH2Q99487 392 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 CD248Q9HCU0 757 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 ADAM30Q9UKF2 790 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 UBXN8O00124 270 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 AQP5P55064 265 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 FBXO25Q8TCJ0 367 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 CDC42EP4Q9H3Q1 356 aaKnown RBP13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 DNAJC16Q9Y2G8 782 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 CPA3P15088 417 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 SERPINB5P36952 375 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 ETFBP38117 255 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 ALDH1A3P47895 512 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 RASA2Q15283 850 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 ATP6AP1LQ52LC2 224 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 TDRD10Q5VZ19 366 aaKnown RBP13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 ZNF34Q8IZ26 560 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 SAMD3Q8N6K7 520 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 SNRNP27Q8WVK2 155 aaKnown RBP13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 YIPF2Q9BWQ6 316 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 RXFP1Q9HBX9 757 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 RGS18Q9NS28 235 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 GEMIN8Q9NWZ8 242 aaKnown RBP13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 CYP39A1Q9NYL5 469 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 FAM153AQ9UHL3 310 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 ZMYND8Q9ULU4 1186 aaPredicted RBP13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 PRG3Q9Y2Y8 225 aaPredicted RBP13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 PNPLA6Q8IY17 1366 aa13.64□□□□□ -0.23
CSPG4P11-201ENST00000560634 TRIM24O15164 1050 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 LSM8O95777 96 aaKnown RBP13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 ITGB3P05106 788 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 CTSHP09668 335 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 GYS1P13807 737 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 WASHC2DQ5SRD0 308 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms