RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 NUDT17P0C025 328 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 PTK6Q13882 451 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 SEPT6Q14141 434 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 DENND5BQ6ZUT9 1274 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 HACE1Q8IYU2 909 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 REPS2Q8NFH8 660 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 HASPINQ8TF76 798 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 CDKL2Q92772 493 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 AVENQ9NQS1 362 aaPredicted RBP15.48■□□□□ 0.07
CUX1-215ENST00000556210 PRMT7Q9NVM4 692 aaPredicted RBP15.48■□□□□ 0.07
CUX1-215ENST00000556210 DDX60Q8IY21 1712 aaKnown RBP15.48■□□□□ 0.07
CUX1-215ENST00000556210 A0A1B0GUL6 1792 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 KBTBD13C9JR72 458 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 CCDC14Q49A88 953 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 ZCCHC23Q6ZST2 131 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 C12orf56Q8IXR9 622 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 ANKRD13AQ8IZ07 590 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 BEST2Q8NFU1 509 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 FAM161BQ96MY7 647 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 TRIM4Q9C037 500 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.48■□□□□ 0.078e-7■■■□□ 15.9
CUX1-215ENST00000556210 HMGXB4Q9UGU5 601 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 C2orf71A6NGG8 1288 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 ASS1P00966 412 aaKnown RBP15.48■□□□□ 0.07
CUX1-215ENST00000556210 BGNP21810 368 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 AP3M2P53677 418 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 SATB1Q01826 763 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 TNFAIP2Q03169 654 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 LRRC6Q86X45 466 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 CDCA5Q96FF9 252 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 ACO2Q99798 780 aaKnown RBP15.48■□□□□ 0.07
CUX1-215ENST00000556210 GPRC5DQ9NZD1 345 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 HEY2Q9UBP5 337 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 LRP5O75197 1615 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 MGRN1O60291 552 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 ATP5HO75947 161 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 HMGCRP04035 888 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 KRT16P08779 473 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 MMP8P22894 467 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 RBL1P28749 1068 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 TAS1R3Q7RTX0 852 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 SYNPO2Q9UMS6 1093 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 KCNK1O00180 336 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 ACKR2O00590 384 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 ARIH2O95376 493 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 CYP2C9P11712 490 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 UNGP13051 313 aaPredicted RBP15.47■□□□□ 0.07
CUX1-215ENST00000556210 RPL22P35268 128 aaKnown RBP15.47■□□□□ 0.07
CUX1-215ENST00000556210 RABGGTBP53611 331 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 ANKRD22Q5VYY1 191 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 MON1BQ7L1V2 547 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 GRAMD1AQ96CP6 724 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 TLCD1Q96CP7 247 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 TEPSINQ96N21 525 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 IFT122Q9HBG6 1241 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 SCOCQ9UIL1 159 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 GOLGA8TH3BQL2 631 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 SERPINB6P35237 376 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 DRG2P55039 364 aaKnown RBP15.47■□□□□ 0.07
CUX1-215ENST00000556210 GDF10P55107 478 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 NCALDP61601 193 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 KBTBD12Q3ZCT8 623 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 ANKRD20A2Q5SQ80 823 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 ANKRD20A1Q5TYW2 823 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 PPP1R2P3Q6NXS1 205 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 RNF135Q8IUD6 432 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 USH1CQ9Y6N9 552 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 MYH7BA7E2Y1 1941 aa15.47■□□□□ 0.07
CUX1-215ENST00000556210 SOWAHBA6NEL2 793 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 PPP1R12AO14974 1030 aaPredicted RBP15.46■□□□□ 0.07
CUX1-215ENST00000556210 PLA2G6O60733 806 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 FAM155BO75949 473 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 SKIP12755 728 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 CCDC130P13994 396 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 SCN4BQ8IWT1 228 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 KATNAL2Q8IYT4 538 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 ARHGAP24Q8N264 748 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 SMC1BQ8NDV3 1235 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 DNERQ8NFT8 737 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 FBXO41Q8TF61 875 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 SREK1Q8WXA9 508 aaKnown RBP15.46■□□□□ 0.07
CUX1-215ENST00000556210 GCOM2Q9BZD3 368 aaPredicted RBP15.46■□□□□ 0.07
CUX1-215ENST00000556210 MINDY3Q9H8M7 445 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 RSAD1Q9HA92 442 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 RXFP1Q9HBX9 757 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 IL1RAPL1Q9NZN1 696 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 CCL15-CCL14A0A0B4J2E2 113 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 C5orf60A6NFR6 353 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 TMEM191CA6NGB0 347 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 GPR25O00155 361 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 TYK2P29597 1187 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 FAAP100Q0VG06 881 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 CCL15Q16663 113 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 TAF1BQ53T94 588 aaPredicted RBP15.46■□□□□ 0.07
CUX1-215ENST00000556210 ARMCX2Q7L311 632 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 EXOC8Q8IYI6 725 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 NAF1Q96HR8 494 aaKnown RBP15.46■□□□□ 0.07
CUX1-215ENST00000556210 AP5M1Q9H0R1 490 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 DHX33Q9H6R0 707 aaKnown RBP15.46■□□□□ 0.07
CUX1-215ENST00000556210 MANSC1Q9H8J5 431 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms