RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 AHCYL1O43865 530 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 LPXNO60711 386 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 SMIM24O75264 130 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 LRCH4O75427 683 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 AP1G2O75843 785 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 DGAT1O75907 488 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 RAD17O75943 681 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 HARSP12081 509 aaKnown RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 KCNA2P16389 499 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 SFNP31947 248 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PHBP35232 272 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 ELK3P41970 407 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 HIRAP54198 1017 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PRKCEQ02156 737 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 SLC34A1Q06495 639 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PTK7Q13308 1070 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 THOC5Q13769 683 aaKnown RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 NCOA4Q13772 614 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 SEPT7Q16181 437 aaKnown RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 CCDC6Q16204 474 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 KBTBD12Q3ZCT8 623 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 MTERF2Q49AM1 385 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PTPN20Q4JDL3 420 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 CIAPIN1Q6FI81 312 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 GPAT2Q6NUI2 795 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 IRGCQ6NXR0 463 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PCGF5Q86SE9 256 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 MCF2L2Q86YR7 1114 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 CCNJLQ8IV13 435 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 NLGN1Q8N2Q7 840 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 EMC1Q8N766 993 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 FAM71DQ8N9W8 422 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 ALKBH8Q96BT7 664 aaKnown RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 OXNAD1Q96HP4 312 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 TSC22D3Q99576 134 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 SH3GL3Q99963 347 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 DDX50Q9BQ39 737 aaKnown RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PHACTR1Q9C0D0 580 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 CRISPLD2Q9H0B8 497 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PLAC1Q9HBJ0 212 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 FBXO40Q9UH90 709 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 XPO7Q9UIA9 1087 aaKnown RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 CXorf49A8MYA2 514 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 KBTBD13C9JR72 458 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 CYB561D2O14569 222 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 UGT1A9O60656 530 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 MT-ND3P03897 115 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 WEE2P0C1S8 567 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 GCLCP48506 637 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 PAPOLAP51003 745 aaKnown RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 MYL6P60660 151 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 ZBTB16Q05516 673 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 SLC18A2Q05940 514 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 BAATQ14032 418 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 DLGAP5Q15398 846 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 KLHL38Q2WGJ6 581 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 RAB6CQ53S08 254 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 ARHGEF16Q5VV41 709 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 DENND1BQ6P3S1 775 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 SLC30A9Q6PML9 568 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 NPNTQ6UXI9 565 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 ZC3H18Q86VM9 953 aaKnown RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 VSIG10LQ86VR7 867 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 CHSY1Q86X52 802 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 PALM2Q8IXS6 379 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 VPS52Q8N1B4 723 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 SLC44A1Q8WWI5 657 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 GATA6Q92908 595 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 CGRRF1Q99675 332 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 TRIM56Q9BRZ2 755 aaKnown RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 C20orf27Q9GZN8 174 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 RAB6CQ9H0N0 254 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 UGT1A7Q9HAW7 530 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 UGT1A10Q9HAW8 530 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 UGT1A8Q9HAW9 530 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 PAPOLBQ9NRJ5 636 aaKnown RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 TMOD2Q9NZR1 351 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 STX18Q9P2W9 335 aaKnown RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 STRIP2Q9ULQ0 834 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 LRCH1Q9Y2L9 728 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 ADGRA2Q96PE1 1338 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 A0A0B4J269 797 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 CAPN14A8MX76 684 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 NRG2O14511 850 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 ONECUT3O60422 494 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 ATG7O95352 703 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 TGDSO95455 350 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 TOP3BO95985 862 aaKnown RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 ASS1P00966 412 aaKnown RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 NR3C2P08235 984 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 ESRRAP11474 423 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 NEFHP12036 1026 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 KDELR1P24390 212 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 YY1P25490 414 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 PSMA2P25787 234 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 SERPINB4P48594 390 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 RAB27AP51159 221 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 RTP1P59025 263 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 BASP1P80723 227 aaKnown RBP5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 412.2 ms