RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 GPNMBQ14956 572 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 TMEM132DQ14C87 1099 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 ASIC2Q16515 512 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 RSPO4Q2I0M5 234 aaPredicted RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 SEZ6Q53EL9 994 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 FAM47CQ5HY64 1035 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 NKAPLQ5M9Q1 402 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 DNTTIP2Q5QJE6 756 aaKnown RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 ZNF618Q5T7W0 954 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 FBXW10Q5XX13 1052 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 JADE1Q6IE81 842 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 GJB7Q6PEY0 223 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 ZNF571Q7Z3V5 609 aaPredicted RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 TXLNBQ8N3L3 684 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 TTC39CQ8N584 583 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 CCDC42Q96M95 316 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 ZMAT2Q96NC0 199 aaKnown RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 DEFB118Q96PH6 123 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 PPP1R10Q96QC0 940 aaKnown RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 PPP1R16BQ96T49 567 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 FTHL17Q9BXU8 183 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 PBX4Q9BYU1 374 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 IMPG2Q9BZV3 1241 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 BHLHE41Q9C0J9 482 aaPredicted RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 RNF208Q9H0X6 261 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 NXF3Q9H4D5 531 aaKnown RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 ZNF576Q9H609 170 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 ELAC1Q9H777 363 aaKnown RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 UBE2TQ9NPD8 197 aaPredicted RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 UBN1Q9NPG3 1134 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 RGS18Q9NS28 235 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 FAM105AQ9NUU6 356 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 STRIP2Q9ULQ0 834 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 PADI3Q9ULW8 664 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 UBQLN1Q9UMX0 589 aaKnown RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 GIT1Q9Y2X7 761 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 A0A087X0T9 212 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 A0A0A6YYK5 440 aaPredicted RBP8.98□□□□□ -0.97
VPS29-203ENST00000546588 CCDC85CA6NKD9 419 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 FOXN3O00409 490 aaPredicted RBP8.98□□□□□ -0.97
VPS29-203ENST00000546588 PIRO00625 290 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 PTGESO14684 152 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 XPOTO43592 962 aaKnown RBP8.98□□□□□ -0.97
VPS29-203ENST00000546588 CREB3O43889 395 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 MGEA5O60502 916 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 FAM228BP0C875 321 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 SELPP16109 830 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 SOX9P48436 509 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 CTCFP49711 727 aaPredicted RBP8.98□□□□□ -0.97
VPS29-203ENST00000546588 YARSP54577 528 aaKnown RBP8.98□□□□□ -0.97
VPS29-203ENST00000546588 HADHBP55084 474 aaKnown RBP8.98□□□□□ -0.97
VPS29-203ENST00000546588 GPLD1P80108 840 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 BFSP2Q13515 415 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 SLC39A5Q6ZMH5 540 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 UBE2Q1Q7Z7E8 422 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 CDR2LQ86X02 465 aaPredicted RBP8.98□□□□□ -0.97
VPS29-203ENST00000546588 MICALL1Q8N3F8 863 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 PPM1KQ8N3J5 372 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 SPATA18Q8TC71 538 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 U2AF1L4Q8WU68 220 aaKnown RBP8.98□□□□□ -0.97
VPS29-203ENST00000546588 PPP1R13LQ8WUF5 828 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 HNRNPLLQ8WVV9 542 aaKnown RBP8.98□□□□□ -0.97
VPS29-203ENST00000546588 APBB2Q92870 758 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 KAT5Q92993 513 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 SRPK1Q96SB4 655 aaKnown RBP8.98□□□□□ -0.97
VPS29-203ENST00000546588 TSGA10Q9BZW7 698 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 MUC3BQ9H195 1237 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 ISCUQ9H1K1 167 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 CYP3A43Q9HB55 503 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 GDAP2Q9NXN4 497 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 SNTG2Q9NY99 539 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 NAGPAQ9UK23 515 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 TBX21Q9UL17 535 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS29-203ENST00000546588 PCDHB2Q9Y5E7 798 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 NCANO14594 1321 aa8.98□□□□□ -0.97
VPS29-203ENST00000546588 ELOA3CA0A087WX78 387 aaPredicted RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 SMIM28A0A1B0GU29 152 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 ELOA3DA6NLF2 546 aaPredicted RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 C9IYK1 514 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 DDX3XO00571 662 aaKnown RBP eCLIP8.97□□□□□ -0.971e-8■■□□□ 11.8
VPS29-203ENST00000546588 GREM1O60565 184 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 EOMESO95936 686 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 CYP1A1P04798 512 aaPredicted RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 HARSP12081 509 aaKnown RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 CYP11B1P15538 503 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 CDH5P33151 784 aaPredicted RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 PNPLA4P41247 253 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 AARSP49588 968 aaKnown RBP eCLIP8.97□□□□□ -0.97
VPS29-203ENST00000546588 GSCP56915 257 aaPredicted RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 BPIFB4P59827 614 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 MYL6P60660 151 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 YWHAEP62258 255 aaKnown RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 ETF1P62495 437 aaKnown RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 SATB1Q01826 763 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 CDR2Q01850 454 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 BIRC3Q13489 604 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 COL9A2Q14055 689 aaPredicted RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 ZNF699Q32M78 642 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 ELOA3BQ3SY89 546 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms