RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	BBS9	Q3SYG4	887 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	FAM102A	Q5T9C2	384 aa	Predicted RBP	13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	TTC39B	Q5VTQ0	682 aa	Predicted RBP	13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	TXNRD3NB	Q6F5E7	133 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	SLC26A11	Q86WA9	606 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	ERO1B	Q86YB8	467 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	C4orf33	Q8N1A6	199 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	C1orf127	Q8N9H9	656 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	MCU	Q8NE86	351 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	JOSD2	Q8TAC2	188 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	RAB3IL1	Q8TBN0	382 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	ERP27	Q96DN0	273 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	HPDL	Q96IR7	371 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	RMDN2	Q96LZ7	410 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	MMP19	Q99542	508 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	FERMT1	Q9BQL6	677 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	POLI	Q9UNA4	740 aa		13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	13.61	□□□□□ -0.23
CPSF7-223	ENST00000544669	LACTBL1	A8MY62	500 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	APOL1	O14791	398 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	LPXN	O60711	386 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	ITGB3	P05106	788 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	TXN	P10599	105 aa	Known RBP	13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	CYP2C8	P10632	490 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	PDGFRA	P16234	1089 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	CNTF	P26441	200 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	MARK3	P27448	753 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	IL1R2	P27930	398 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	MAGEA6	P43360	314 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	NR2C2	P49116	596 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	CDH6	P55285	790 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	FASTKD3	Q14CZ7	662 aa	Known RBP	13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	CCDC62	Q6P9F0	684 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	GADL1	Q6ZQY3	521 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	ARC	Q7LC44	396 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	ANKMY2	Q8IV38	441 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	CDKL3	Q8IVW4	592 aa	Predicted RBP	13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	ARHGAP24	Q8N264	748 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	LRRC71	Q8N4P6	559 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	FAM71D	Q8N9W8	422 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	SLC44A1	Q8WWI5	657 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	DCPS	Q96C86	337 aa	Known RBP	13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	APOPT1	Q96IL0	206 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	RNF157	Q96PX1	679 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	MYLK2	Q9H1R3	596 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	CYLD	Q9NQC7	956 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	SIX4	Q9UIU6	781 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	C15orf41	Q9Y2V0	281 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	DNAJC25-GNG10	A0A024R161	153 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	C2CD4B	A6NLJ0	364 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	TTLL13P	A6NNM8	815 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669		H7C0C1	242 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	MDM4	O15151	490 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	CCDC22	O60826	627 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	DNAJC6	O75061	913 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	KRT38	O76015	456 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	ANP32D	O95626	131 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	CXCL8	P10145	99 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	PTPN4	P29074	926 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	SSTR1	P30872	391 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	ATP5O	P48047	213 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	SERPINB9	P50453	376 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	SLC18A2	Q05940	514 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	FSTL1	Q12841	308 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	CRYM	Q14894	314 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	HSDL1	Q3SXM5	330 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	FNBP1L	Q5T0N5	605 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	TREML2	Q5T2D2	321 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	ATG16L1	Q676U5	607 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	CYS1	Q717R9	158 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	PRUNE1	Q86TP1	453 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	SESTD1	Q86VW0	696 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	CCDC125	Q86Z20	511 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	ARFGAP1	Q8N6T3	406 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	DCAKD	Q8WVC6	231 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	C10orf82	Q8WW14	230 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	HSPH1	Q92598	858 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	FAF2	Q96CS3	445 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	ACAP3	Q96P50	834 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	ZNF670	Q9BS34	389 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	PCSK1N	Q9UHG2	260 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	ZFP69B	Q9UJL9	534 aa		13.6	□□□□□ -0.23
CPSF7-223	ENST00000544669	KRT16	P08779	473 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	SNRPA	P09012	282 aa	Known RBP	13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	NEFH	P12036	1026 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	SDC4	P31431	198 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	ADCY1	Q08828	1119 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	PTK7	Q13308	1070 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	KCNJ11	Q14654	390 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	E2F5	Q15329	346 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	ZRSR2	Q15696	482 aa	Known RBP	13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	SLC1A5	Q15758	541 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	SMTNL2	Q2TAL5	461 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	DCAF4L1	Q3SXM0	396 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	KCNT1	Q5JUK3	1230 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	JADE1	Q6IE81	842 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	OR6B2	Q6IFH4	312 aa		13.59	□□□□□ -0.23
CPSF7-223	ENST00000544669	NLRP9	Q7RTR0	991 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms