RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 MYRFLQ96LU7 910 aa18.07■□□□□ 0.48
LIG1-204ENST00000542460 NOX5Q96PH1 765 aa18.07■□□□□ 0.48
LIG1-204ENST00000542460 SYT11Q9BT88 431 aa18.07■□□□□ 0.48
LIG1-204ENST00000542460 CD207Q9UJ71 328 aa18.07■□□□□ 0.48
LIG1-204ENST00000542460 HMGA1P17096 107 aaKnown RBP18.06■□□□□ 0.48
LIG1-204ENST00000542460 RAB41Q5JT25 222 aa18.06■□□□□ 0.48
LIG1-204ENST00000542460 ATAT1Q5SQI0 421 aa18.06■□□□□ 0.48
LIG1-204ENST00000542460 ZNF571Q7Z3V5 609 aaPredicted RBP18.06■□□□□ 0.48
LIG1-204ENST00000542460 LEMD2Q8NC56 503 aa18.06■□□□□ 0.48
LIG1-204ENST00000542460 SMRP1Q8NCR6 262 aa18.06■□□□□ 0.48
LIG1-204ENST00000542460 STKLD1Q8NE28 680 aa18.06■□□□□ 0.48
LIG1-204ENST00000542460 TRMT2BQ96GJ1 504 aaKnown RBP18.06■□□□□ 0.48
LIG1-204ENST00000542460 CORO1BQ9BR76 489 aa18.06■□□□□ 0.48
LIG1-204ENST00000542460 TTLL2Q9BWV7 592 aa18.06■□□□□ 0.48
LIG1-204ENST00000542460 FBXO44Q9H4M3 255 aa18.06■□□□□ 0.48
LIG1-204ENST00000542460 LRRC4Q9HBW1 653 aa18.06■□□□□ 0.48
LIG1-204ENST00000542460 ASAH2Q9NR71 780 aa18.06■□□□□ 0.48
LIG1-204ENST00000542460 SEPT11Q9NVA2 429 aaKnown RBP18.06■□□□□ 0.48
LIG1-204ENST00000542460 IL37Q9NZH6 218 aa18.06■□□□□ 0.48
LIG1-204ENST00000542460 DNMT3BQ9UBC3 853 aaKnown RBP18.06■□□□□ 0.48
LIG1-204ENST00000542460 MAGED2Q9UNF1 606 aaPredicted RBP18.06■□□□□ 0.48
LIG1-204ENST00000542460 MTCL1Q9Y4B5 1905 aaKnown RBP18.06■□□□□ 0.48
LIG1-204ENST00000542460 REV3LO60673 3130 aa18.06■□□□□ 0.48
LIG1-204ENST00000542460 H3BQ06 376 aaPredicted RBP18.05■□□□□ 0.48
LIG1-204ENST00000542460 CYP1A1P04798 512 aaPredicted RBP18.05■□□□□ 0.48
LIG1-204ENST00000542460 YWHAQP27348 245 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 RPL34P49207 117 aaKnown RBP18.05■□□□□ 0.48
LIG1-204ENST00000542460 RGS7P49802 495 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 KIF11P52732 1056 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 USP46P62068 366 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 PDCLQ13371 301 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 CYP4A22Q5TCH4 519 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 GPRIN1Q7Z2K8 1008 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 GRASPQ7Z6J2 395 aaPredicted RBP18.05■□□□□ 0.48
LIG1-204ENST00000542460 VPS36Q86VN1 386 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 C1orf131Q8NDD1 294 aaKnown RBP18.05■□□□□ 0.48
LIG1-204ENST00000542460 SCAMP5Q8TAC9 235 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 RIPOR3Q96MK2 946 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 PCDHB18PQ96TA0 734 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 COL25A1Q9BXS0 654 aaPredicted RBP18.05■□□□□ 0.48
LIG1-204ENST00000542460 SLC4A5Q9BY07 1137 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 CYLDQ9NQC7 956 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 ST7Q9NRC1 585 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 HCFC1R1Q9NWW0 138 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 ARHGAP20Q9P2F6 1191 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 UXTQ9UBK9 157 aaPredicted RBP18.05■□□□□ 0.48
LIG1-204ENST00000542460 CYTH4Q9UIA0 394 aa18.05■□□□□ 0.48
LIG1-204ENST00000542460 FAM92AA1XBS5 289 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 FGF19O95750 216 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 RHOP08100 348 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 ACADSBP45954 432 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 TKTL1P51854 596 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 EPHA5P54756 1037 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 SNX16P57768 344 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 CDK17Q00537 523 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 IFRD2Q12894 506 aaPredicted RBP18.04■□□□□ 0.48
LIG1-204ENST00000542460 CLUL1Q15846 466 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 PABPC1LQ4VXU2 614 aaKnown RBP18.04■□□□□ 0.48
LIG1-204ENST00000542460 TMEM110Q86TL2 294 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 FEZF2Q8TBJ5 459 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 PPP1R13BQ96KQ4 1090 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 PANX2Q96RD6 677 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 LRRC3Q9BY71 257 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 PRDM6Q9NQX0 595 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 USP3Q9Y6I4 520 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 PTPRDP23468 1912 aa18.04■□□□□ 0.48
LIG1-204ENST00000542460 PLEKP08567 350 aaPredicted RBP18.03■□□□□ 0.48
LIG1-204ENST00000542460 UNGP13051 313 aaPredicted RBP18.03■□□□□ 0.48
LIG1-204ENST00000542460 MTHFRP42898 656 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 NOMO3P69849 1222 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 CLEC16AQ2KHT3 1053 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 PDZD4Q76G19 769 aaPredicted RBP18.03■□□□□ 0.48
LIG1-204ENST00000542460 TMC8Q8IU68 726 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 HS6ST3Q8IZP7 471 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 SIX6OS1Q8N1H7 587 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 CPA5Q8WXQ8 436 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 SLITRK1Q96PX8 696 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 ZNF334Q9HCZ1 680 aaPredicted RBP18.03■□□□□ 0.48
LIG1-204ENST00000542460 AVENQ9NQS1 362 aaPredicted RBP18.03■□□□□ 0.48
LIG1-204ENST00000542460 SSU72P8A0A1W2PR75 194 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 ZNF197O14709 1029 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 ZBED1O96006 694 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 MYL4P12829 197 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 LCP1P13796 627 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 GSDMDP57764 484 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 ADIGQ0VDE8 80 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 TAF10Q12962 218 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 NAA35Q5VZE5 725 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 ERICH1Q86X53 443 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 MSANTD4Q8NCY6 345 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 SLC30A5Q8TAD4 765 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 OLIG1Q8TAK6 271 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 OVCA2Q8WZ82 227 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 FBXO32Q969P5 355 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 NECTIN4Q96NY8 510 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 CPXM1Q96SM3 734 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.03■□□□□ 0.48
LIG1-204ENST00000542460 WDR6Q9NNW5 1121 aaKnown RBP18.03■□□□□ 0.48
LIG1-204ENST00000542460 ADAMTS1Q9UHI8 967 aa18.03■□□□□ 0.48
LIG1-204ENST00000542460 SCML2Q9UQR0 700 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms