RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 SNX17Q15036 470 aa17.99■□□□□ 0.47
SPIDR-227ENST00000541342 PPP1R21Q6ZMI0 780 aa17.99■□□□□ 0.47
SPIDR-227ENST00000541342 ZNF365Q70YC5 407 aa17.99■□□□□ 0.47
SPIDR-227ENST00000541342 KIF12Q96FN5 646 aa17.99■□□□□ 0.47
SPIDR-227ENST00000541342 HPDLQ96IR7 371 aa17.99■□□□□ 0.47
SPIDR-227ENST00000541342 PITPNM3Q9BZ71 974 aa17.99■□□□□ 0.47
SPIDR-227ENST00000541342 SLCO1B3Q9NPD5 702 aa17.99■□□□□ 0.47
SPIDR-227ENST00000541342 PCDHGC3Q9UN70 934 aa17.99■□□□□ 0.47
SPIDR-227ENST00000541342 C17orf102A2RUQ5 167 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 ZSCAN5DPP0CG00 497 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 ATICP31939 592 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 ATP13A4Q4VNC1 1196 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 NOTUMQ6P988 496 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 ITGA11Q9UKX5 1188 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 CHKBQ9Y259 395 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 CEP83Q9Y592 693 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 DUSP11O75319 330 aaKnown RBP17.98■□□□□ 0.47
SPIDR-227ENST00000541342 C6orf222P0C671 652 aaPredicted RBP17.98■□□□□ 0.47
SPIDR-227ENST00000541342 SLC8A3P57103 927 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 DNAJC3Q13217 504 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 LIN9Q5TKA1 542 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 RHOT1Q8IXI2 618 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 KATNAL1Q9BW62 490 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 NXF3Q9H4D5 531 aaKnown RBP17.98■□□□□ 0.47
SPIDR-227ENST00000541342 LSM8O95777 96 aaKnown RBP17.98■□□□□ 0.47
SPIDR-227ENST00000541342 YWHAEP62258 255 aaKnown RBP17.98■□□□□ 0.47
SPIDR-227ENST00000541342 TRIM32Q13049 653 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 SLC4A11Q8NBS3 891 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 FAXDC2Q96IV6 333 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 RSRC1Q96IZ7 334 aaKnown RBP17.98■□□□□ 0.47
SPIDR-227ENST00000541342 SNX27Q96L92 541 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 RNF19AQ9NV58 838 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 DNPEPQ9ULA0 475 aa17.98■□□□□ 0.47
SPIDR-227ENST00000541342 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.98■□□□□ 0.47
SPIDR-227ENST00000541342 FGFR1P11362 822 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 ETS1P14921 441 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 CDH5P33151 784 aaPredicted RBP17.97■□□□□ 0.47
SPIDR-227ENST00000541342 LACTBP83111 547 aaPredicted RBP17.97■□□□□ 0.47
SPIDR-227ENST00000541342 HP1BP3Q5SSJ5 553 aaPredicted RBP17.97■□□□□ 0.47
SPIDR-227ENST00000541342 DENND1BQ6P3S1 775 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 ELOVL4Q9GZR5 314 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 ETNK1Q9HBU6 452 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 SCN10AQ9Y5Y9 1956 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 CILPO75339 1184 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 KRT10P13645 584 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 PAX7P23759 505 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 GJC1P36383 396 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 FCGRTP55899 365 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 C7orf31Q8N865 590 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 STARD13Q9Y3M8 1113 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 TCRBV5S1A1TA0A578 114 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 LIASO43766 372 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 CDC25CP30307 473 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 FLT3LGP49771 235 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 NAA25Q14CX7 972 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 PAXIP1Q6ZW49 1069 aaPredicted RBP17.97■□□□□ 0.47
SPIDR-227ENST00000541342 BZW1Q7L1Q6 419 aaKnown RBP17.97■□□□□ 0.47
SPIDR-227ENST00000541342 NT5DC4Q86YG4 428 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 EXD1Q8NHP7 514 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 GRAMD1AQ96CP6 724 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 TMEM237Q96Q45 408 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 PAIP2Q9BPZ3 127 aaKnown RBP17.97■□□□□ 0.47
SPIDR-227ENST00000541342 SAYSD1Q9NPB0 183 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 CYTH4Q9UIA0 394 aa17.97■□□□□ 0.47
SPIDR-227ENST00000541342 EXOC1LA0A1B0GW35 172 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 PI4K2BG5E9Z4 385 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 PPEF2O14830 753 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 PGK1P00558 417 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 RPL7AP62424 266 aaKnown RBP17.96■□□□□ 0.47
SPIDR-227ENST00000541342 RBP5P82980 135 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 IL9RQ01113 521 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 PCBP1Q15365 356 aaKnown RBP eCLIP17.96■□□□□ 0.47
SPIDR-227ENST00000541342 PKN2Q16513 984 aaKnown RBP17.96■□□□□ 0.47
SPIDR-227ENST00000541342 ALKAL1Q6UXT8 129 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 TMEM35BQ8NCS4 154 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 BBOF1Q8ND07 529 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 ERP27Q96DN0 273 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 PLEKHA5Q9HAU0 1116 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 TUBGCP4Q9UGJ1 667 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 PHTF1Q9UMS5 762 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 PIN4Q9Y237 131 aaKnown RBP17.96■□□□□ 0.47
SPIDR-227ENST00000541342 USTQ9Y2C2 406 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 TMEM88BA6NKF7 163 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 CD19P15391 556 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 YARSP54577 528 aaKnown RBP17.96■□□□□ 0.47
SPIDR-227ENST00000541342 GJA9P57773 515 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 ZBTB6Q15916 424 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 GNASQ5JWF2 1037 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 PPP1R2P3Q6NXS1 205 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 RIBC1Q8N443 379 aaPredicted RBP17.96■□□□□ 0.47
SPIDR-227ENST00000541342 MRPL47Q9HD33 250 aaKnown RBP17.96■□□□□ 0.47
SPIDR-227ENST00000541342 PARVAQ9NVD7 372 aa17.96■□□□□ 0.47
SPIDR-227ENST00000541342 NKX1-2Q9UD57 310 aaPredicted RBP17.96■□□□□ 0.47
SPIDR-227ENST00000541342 PRPF4O43172 522 aaKnown RBP eCLIP17.95■□□□□ 0.461e-8■■■■■ 32.2
SPIDR-227ENST00000541342 PECAM1P16284 738 aaPredicted RBP17.95■□□□□ 0.46
SPIDR-227ENST00000541342 AKAP5P24588 427 aa17.95■□□□□ 0.46
SPIDR-227ENST00000541342 RPA3P35244 121 aaPredicted RBP17.95■□□□□ 0.46
SPIDR-227ENST00000541342 PRKCZQ05513 592 aa17.95■□□□□ 0.46
SPIDR-227ENST00000541342 GLRA4Q5JXX5 417 aa17.95■□□□□ 0.46
SPIDR-227ENST00000541342 C18orf25Q96B23 403 aaPredicted RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms