RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SLC10A6Q3KNW5 377 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 ZNF484Q5JVG2 852 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 SH3PXD2AQ5TCZ1 1133 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 ZC3H18Q86VM9 953 aaKnown RBP13.76□□□□□ -0.21
LDLR-203ENST00000535915 ANKRD13AQ8IZ07 590 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 PEBP4Q96S96 227 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 PAFAH2Q99487 392 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 SLCO1B3Q9NPD5 702 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.76□□□□□ -0.21
LDLR-203ENST00000535915 TYROBPO43914 113 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 ARF4P18085 180 aaPredicted RBP13.76□□□□□ -0.21
LDLR-203ENST00000535915 GPD1P21695 349 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 ZNF143P52747 638 aaPredicted RBP13.76□□□□□ -0.21
LDLR-203ENST00000535915 NDST1P52848 882 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 R3HDM1Q15032 1099 aaKnown RBP13.76□□□□□ -0.21
LDLR-203ENST00000535915 CDO1Q16878 200 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 FAM187BQ17R55 369 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 KLHL38Q2WGJ6 581 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 MAP1SQ66K74 1059 aaPredicted RBP13.76□□□□□ -0.21
LDLR-203ENST00000535915 OR6B2Q6IFH4 312 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 DARS2Q6PI48 645 aaKnown RBP13.76□□□□□ -0.21
LDLR-203ENST00000535915 NPNTQ6UXI9 565 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 KIF2BQ8N4N8 673 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 TACO1Q9BSH4 297 aaKnown RBP13.76□□□□□ -0.21
LDLR-203ENST00000535915 ACSS3Q9H6R3 686 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 VRTNQ9H8Y1 702 aa13.76□□□□□ -0.21
LDLR-203ENST00000535915 SCN1AP35498 2009 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 SPDYE5A6NIY4 337 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 E7ESA3 106 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 OSBPP22059 807 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 SLC8A1P32418 973 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 PCK1P35558 622 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 ROR1Q01973 937 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 DPYSL3Q14195 570 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 LVRNQ6Q4G3 990 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 ILDR2Q71H61 639 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 SGIP1Q9BQI5 828 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 WDR83Q9BRX9 315 aaKnown RBP13.75□□□□□ -0.21
LDLR-203ENST00000535915 CNPY3Q9BT09 278 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 MROH8Q9H579 483 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 FETUBQ9UGM5 382 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 ZMYND8Q9ULU4 1186 aaPredicted RBP13.75□□□□□ -0.21
LDLR-203ENST00000535915 BARX2Q9UMQ3 279 aaPredicted RBP13.75□□□□□ -0.21
LDLR-203ENST00000535915 E5RJQ4 531 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 GRAP2O75791 330 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 LGALS2P05162 132 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 PDGFRAP16234 1089 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 MSH2P43246 934 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 RNASELQ05823 741 aaKnown RBP13.75□□□□□ -0.21
LDLR-203ENST00000535915 POU5F1BQ06416 359 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 E2F5Q15329 346 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 SEPT7Q16181 437 aaKnown RBP13.75□□□□□ -0.21
LDLR-203ENST00000535915 C15orf59Q2T9L4 293 aaPredicted RBP13.75□□□□□ -0.21
LDLR-203ENST00000535915 RAB6CQ53S08 254 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 ADGRD1Q6QNK2 874 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 RGS9BPQ6ZS82 235 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 MAGEC3Q8TD91 643 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 RXFP2Q8WXD0 754 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 RAB6CQ9H0N0 254 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 TSPAN16Q9UKR8 245 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 CHMP2BQ9UQN3 213 aa13.75□□□□□ -0.21
LDLR-203ENST00000535915 SMAPO00193 183 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 PRPSAP2O60256 369 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 ATP2A2P16615 1042 aaKnown RBP13.74□□□□□ -0.21
LDLR-203ENST00000535915 ARHGAP1Q07960 439 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 SYCP2LQ5T4T6 812 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 FAM183BPQ6ZVS7 135 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 ARMCX2Q7L311 632 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.74□□□□□ -0.21
LDLR-203ENST00000535915 NLRP7Q8WX94 980 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 TBC1D31Q96DN5 1066 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 PIWIL1Q96J94 861 aaKnown RBP13.74□□□□□ -0.21
LDLR-203ENST00000535915 DPP3Q9NY33 737 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 TRIM33Q9UPN9 1127 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 CCDC189A1A4V9 331 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 ASB14A6NK59 587 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 ZWINTO95229 277 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 IBSPP21815 317 aaPredicted RBP13.74□□□□□ -0.21
LDLR-203ENST00000535915 CCDC15Q0P6D6 951 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 SETDB1Q15047 1291 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 NOMO1Q15155 1222 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 TRNP1Q6NT89 227 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 ITGA11Q9UKX5 1188 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 STK38LQ9Y2H1 464 aa13.74□□□□□ -0.21
LDLR-203ENST00000535915 C2CD4BA6NLJ0 364 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 H7C0C1 242 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 GOLGA8RI6L899 631 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 EDF1O60869 148 aaKnown RBP13.73□□□□□ -0.21
LDLR-203ENST00000535915 KRT16P08779 473 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 CYP3A5P20815 502 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 STIP1P31948 543 aaKnown RBP13.73□□□□□ -0.21
LDLR-203ENST00000535915 ELF1P32519 619 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 ATP5OP48047 213 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 RGS7P49802 495 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 RBP5P82980 135 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 ATP11AP98196 1134 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 RIPK1Q13546 671 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 LAMC2Q13753 1193 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 TFDP2Q14188 446 aa13.73□□□□□ -0.21
LDLR-203ENST00000535915 KRT81Q14533 505 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms