RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	ZNF280B	Q86YH2	543 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	FAM156A	Q8NDB6	213 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	APIP	Q96GX9	242 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	NUP62CL	Q9H1M0	184 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	DHX36	Q9H2U1	1008 aa	Known RBP	3.39	□□□□□ -1.87
CD44-238	ENST00000534296	FAM83D	Q9H4H8	585 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	ATP6V0A4	Q9HBG4	840 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	NRIP3	Q9NQ35	241 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	XPNPEP3	Q9NQH7	507 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	FLRT1	Q9NZU1	646 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	CPNE7	Q9UBL6	633 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	ADAM21	Q9UKJ8	722 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	FRMD4B	Q9Y2L6	1034 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296		H7C1Q1	480 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	PRC1	O43663	620 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	SNX2	O60749	519 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	PIAS2	O75928	621 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	RNF8	O76064	485 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	CHRM5	P08912	532 aa	Predicted RBP	3.38	□□□□□ -1.87
CD44-238	ENST00000534296	MYCL	P12524	364 aa	Predicted RBP	3.38	□□□□□ -1.87
CD44-238	ENST00000534296	CD19	P15391	556 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	TPH1	P17752	444 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	LMO1	P25800	156 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	ACVR2A	P27037	513 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	ADORA2A	P29274	412 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	PTDSS1	P48651	473 aa	Known RBP	3.38	□□□□□ -1.87
CD44-238	ENST00000534296	TUBA4A	P68366	448 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	ARHGEF7	Q14155	803 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	L1TD1	Q5T7N2	865 aa	Known RBP	3.38	□□□□□ -1.87
CD44-238	ENST00000534296	PRAMEF17	Q5VTA0	474 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	SRRM1	Q8IYB3	904 aa	Known RBP	3.38	□□□□□ -1.87
CD44-238	ENST00000534296	DNAJB14	Q8TBM8	379 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	NTN5	Q8WTR8	489 aa	Predicted RBP	3.38	□□□□□ -1.87
CD44-238	ENST00000534296	TMEM171	Q8WVE6	324 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	FYTTD1	Q96QD9	318 aa	Known RBP	3.38	□□□□□ -1.87
CD44-238	ENST00000534296	C17orf80	Q9BSJ5	609 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	INO80B	Q9C086	356 aa	Predicted RBP	3.38	□□□□□ -1.87
CD44-238	ENST00000534296	BTBD1	Q9H0C5	482 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	SMURF2	Q9HAU4	748 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	GBA2	Q9HCG7	927 aa	Predicted RBP	3.38	□□□□□ -1.87
CD44-238	ENST00000534296	PNPLA8	Q9NP80	782 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	TRIM36	Q9NQ86	728 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	OBP2A	Q9NY56	170 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	ITGB1BP2	Q9UKP3	347 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	AMFR	Q9UKV5	643 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	MAFF	Q9ULX9	164 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	GABRQ	Q9UN88	632 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	SNX14	Q9Y5W7	946 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	SNX13	Q9Y5W8	968 aa		3.38	□□□□□ -1.87
CD44-238	ENST00000534296	TMEM233	B4DJY2	109 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	RAB27B	O00194	218 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	CES2	O00748	559 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	TMPRSS11D	O60235	418 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	EXOC3	O60645	756 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	CAND2	O75155	1236 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	GCAT	O75600	419 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	MYF5	P13349	255 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	RHCE	P18577	417 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	ABCG1	P45844	678 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	CPT1A	P50416	773 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	PROK1	P58294	105 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	RPS16	P62249	146 aa	Known RBP	3.37	□□□□□ -1.87
CD44-238	ENST00000534296	E2F1	Q01094	437 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	RHD	Q02161	417 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	HLTF	Q14527	1009 aa	Known RBP eCLIP	3.37	□□□□□ -1.87
CD44-238	ENST00000534296	GRM3	Q14832	879 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	ST3GAL2	Q16842	350 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	ZIK1	Q3SY52	487 aa	Predicted RBP	3.37	□□□□□ -1.87
CD44-238	ENST00000534296	SLC9A4	Q6AI14	798 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	SWSAP1	Q6NVH7	229 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	KIRREL2	Q6UWL6	708 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	MICU3	Q86XE3	530 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	SFTPA1	Q8IWL2	248 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	TERB1	Q8NA31	727 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	PNLDC1	Q8NA58	520 aa	Known RBP	3.37	□□□□□ -1.87
CD44-238	ENST00000534296	OR56A3	Q8NH54	315 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	TTC8	Q8TAM2	541 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	CYP2W1	Q8TAV3	490 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	TSR2	Q969E8	191 aa	Known RBP	3.37	□□□□□ -1.87
CD44-238	ENST00000534296	VPS50	Q96JG6	964 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	C8orf48	Q96LL4	319 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	ASB2	Q96Q27	587 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	SNX18	Q96RF0	628 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	STRBP	Q96SI9	672 aa	Known RBP	3.37	□□□□□ -1.87
CD44-238	ENST00000534296	VN1R3	Q9BXE9	311 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	SLC29A3	Q9BZD2	475 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	CIPC	Q9C0C6	399 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	ZNF212	Q9UDV6	495 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	DRG1	Q9Y295	367 aa	Known RBP	3.37	□□□□□ -1.87
CD44-238	ENST00000534296	USP19	O94966	1318 aa		3.37	□□□□□ -1.87
CD44-238	ENST00000534296	BTBD19	C9JJ37	291 aa		3.36	□□□□□ -1.87
CD44-238	ENST00000534296	TMEM232	C9JQI7	657 aa		3.36	□□□□□ -1.87
CD44-238	ENST00000534296	POC1B-GALNT4	F8VUJ3	575 aa		3.36	□□□□□ -1.87
CD44-238	ENST00000534296		H7C4K7	107 aa		3.36	□□□□□ -1.87
CD44-238	ENST00000534296	AP4M1	O00189	453 aa		3.36	□□□□□ -1.87
CD44-238	ENST00000534296	CD3EAP	O15446	510 aa	Known RBP	3.36	□□□□□ -1.87
CD44-238	ENST00000534296	THAP12	O43422	761 aa		3.36	□□□□□ -1.87
CD44-238	ENST00000534296	RRP9	O43818	475 aa	Known RBP	3.36	□□□□□ -1.87
CD44-238	ENST00000534296	NBPF7	P0C2Y1	421 aa	Predicted RBP	3.36	□□□□□ -1.87
CD44-238	ENST00000534296	TXN	P10599	105 aa	Known RBP	3.36	□□□□□ -1.87

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms