RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 CAVIN2O95810 425 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 LDHAP00338 332 aaKnown RBP16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 GARTP22102 1010 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 SYKP43405 635 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 LHX1P48742 406 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 PSMC1P62191 440 aaKnown RBP16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 ASIC1P78348 528 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 NR1H3Q13133 447 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 CFAP221Q4G0U5 840 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 SCARA3Q6AZY7 606 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 UNQ6494/PRO21346Q6UXR6 183 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 CEP57L1Q8IYX8 460 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 TOP6BLQ8N6T0 577 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 MYLPFQ96A32 169 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 FUBP3Q96I24 572 aaKnown RBP eCLIP16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 ANKRD36BP1Q96IX9 119 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 MYRFLQ96LU7 910 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 C7orf25Q9BPX7 421 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 SYT15Q9BQS2 421 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 GDAP2Q9NXN4 497 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 SIX4Q9UIU6 781 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 INVSQ9Y283 1065 aa16.81■□□□□ 0.28
CHMP4A-207ENST00000533523 NFATC1O95644 943 aa16.8■□□□□ 0.28
CHMP4A-207ENST00000533523 RBP5P82980 135 aa16.8■□□□□ 0.28
CHMP4A-207ENST00000533523 ACAP1Q15027 740 aa16.8■□□□□ 0.28
CHMP4A-207ENST00000533523 C4orf50Q6ZRC1 276 aa16.8■□□□□ 0.28
CHMP4A-207ENST00000533523 TTC30AQ86WT1 665 aa16.8■□□□□ 0.28
CHMP4A-207ENST00000533523 CXorf38Q8TB03 319 aa16.8■□□□□ 0.28
CHMP4A-207ENST00000533523 SPATA18Q8TC71 538 aa16.8■□□□□ 0.28
CHMP4A-207ENST00000533523 LSM14BQ9BX40 385 aaKnown RBP16.8■□□□□ 0.28
CHMP4A-207ENST00000533523 FGFBP2Q9BYJ0 223 aa16.8■□□□□ 0.28
CHMP4A-207ENST00000533523 GCNT4Q9P109 453 aa16.8■□□□□ 0.28
CHMP4A-207ENST00000533523 EBF1Q9UH73 591 aa16.8■□□□□ 0.28
CHMP4A-207ENST00000533523 USP25Q9UHP3 1055 aa16.8■□□□□ 0.28
CHMP4A-207ENST00000533523 BCLAF3A2AJT9 711 aaKnown RBP16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 ATP2C2O75185 946 aa16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 ZNF202O95125 648 aa16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 ANXA13P27216 316 aa16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 MAGEA11P43364 429 aa16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 PDE6CP51160 858 aa16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 NOVA1P51513 510 aaKnown RBP16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 MYO1EQ12965 1108 aa16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 SOWAHAQ2M3V2 549 aa16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 ANO7Q6IWH7 933 aa16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 CYP2U1Q7Z449 544 aa16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 KDF1Q8NAX2 398 aaPredicted RBP16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 MAGEC2Q9UBF1 373 aaPredicted RBP16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 ARHGAP26Q9UNA1 814 aa16.79■□□□□ 0.28
CHMP4A-207ENST00000533523 ADAMTS9Q9P2N4 1935 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 PCNX2A6NKB5 2137 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 UBE4BO95155 1302 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 PTPRJQ12913 1337 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 LNP1A1A4G5 178 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 C4orf47A7E2U8 309 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 GABRDO14764 452 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 TNNC2P02585 160 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 SLFN14P0C7P3 912 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 HDCP19113 662 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 BDNFP23560 247 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 GRIK1P39086 918 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 CYP27A1Q02318 531 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 USP39Q53GS9 565 aaKnown RBP16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 C2orf27AQ580R0 203 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 FAM26FQ5R3K3 315 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 PMS2CLQ68D20 193 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 CAVIN1Q6NZI2 390 aaKnown RBP16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 UNC13DQ70J99 1090 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 GPD1LQ8N335 351 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 CCDC26Q8TAB7 109 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 USP33Q8TEY7 942 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 KBTBD7Q8WVZ9 684 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 GATA6Q92908 595 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 HPDLQ96IR7 371 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 LINC00597Q9H2U6 94 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 TRPM5Q9NZQ8 1165 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 CDH9Q9ULB4 789 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 KALRNO60229 2985 aa16.78■□□□□ 0.28
CHMP4A-207ENST00000533523 PVALEFA0A1B0GWK0 134 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 LEFTY2O00292 366 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 SCAMP3O14828 347 aaKnown RBP16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 KIAA0391O15091 583 aaKnown RBP16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 EIF3DO15371 548 aaKnown RBP eCLIP16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 PRPF6O94906 941 aaKnown RBP16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 TCF3P15923 654 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 OPRD1P41143 372 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 ZNF252P-AS1Q0IIN9 211 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 DAB2IPQ5VWQ8 1189 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 FAM171BQ6P995 826 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 C11orf74Q86VG3 221 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 CCDC33Q8N5R6 958 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 OR5B17Q8NGF7 314 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 SPATA17Q96L03 361 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 CLSTN2Q9H4D0 955 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 CRTAC1Q9NQ79 661 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 TMEM63CQ9P1W3 806 aa16.77■□□□□ 0.28
CHMP4A-207ENST00000533523 ACTN4O43707 911 aaKnown RBP16.76■□□□□ 0.27
CHMP4A-207ENST00000533523 CYP17A1P05093 508 aa16.76■□□□□ 0.27
CHMP4A-207ENST00000533523 MYL1P05976 194 aa16.76■□□□□ 0.27
CHMP4A-207ENST00000533523 PDGFRBP09619 1106 aa16.76■□□□□ 0.27
CHMP4A-207ENST00000533523 BCKDHBP21953 392 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms