RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SYT13Q7L8C5 426 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 DDX42Q86XP3 938 aaKnown RBP eCLIP15.67■□□□□ 0.1
VPS28-215ENST00000531924 PDZD8Q8NEN9 1154 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 FBXO32Q969P5 355 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 LOXL4Q96JB6 756 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 B3GNT5Q9BYG0 378 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 NACA2Q9H009 215 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 SMYD3Q9H7B4 428 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 USP25Q9UHP3 1055 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 CPQQ9Y646 472 aa15.67■□□□□ 0.1
VPS28-215ENST00000531924 CLDN5O00501 218 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 KIF20AO95235 890 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 KCNA4P22459 653 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 CDH8P55286 799 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 STK4Q13043 487 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 DMC1Q14565 340 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 ELF2Q15723 593 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 SGSM1Q2NKQ1 1148 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 KMT5BQ4FZB7 885 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 CEP135Q66GS9 1140 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 FILIP1Q7Z7B0 1213 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 KBTBD6Q86V97 674 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 PARD3BQ8TEW8 1205 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 XYLT2Q9H1B5 865 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 ARRDC1-AS1Q9H2J1 176 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 CFAP97Q9P2B7 532 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 FRMD4BQ9Y2L6 1034 aa15.66■□□□□ 0.1
VPS28-215ENST00000531924 A0A1B0GVL5 298 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 LRRIQ3A6PVS8 624 aaPredicted RBP15.65■□□□□ 0.1
VPS28-215ENST00000531924 SLC30A4O14863 429 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 ADH1CP00326 375 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 NR3C1P04150 777 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 RPN1P04843 607 aaKnown RBP15.65■□□□□ 0.1
VPS28-215ENST00000531924 MYL1P05976 194 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 CMA1P23946 247 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 RAP1GAPP47736 663 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 SEC13P55735 322 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 PKP1Q13835 747 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 C2orf27AQ580R0 203 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 IL31Q6EBC2 164 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 KIAA1958Q8N8K9 716 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 TSTD1Q8NFU3 115 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 SMARCD1Q96GM5 515 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 SPATA32Q96LK8 384 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 RNF38Q9H0F5 515 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 DMAP1Q9NPF5 467 aaPredicted RBP15.65■□□□□ 0.1
VPS28-215ENST00000531924 POLR3BQ9NW08 1133 aaPredicted RBP15.65■□□□□ 0.1
VPS28-215ENST00000531924 NME7Q9Y5B8 376 aa15.65■□□□□ 0.1
VPS28-215ENST00000531924 ZNF638Q14966 1978 aaKnown RBP15.64■□□□□ 0.09
VPS28-215ENST00000531924 PDXKO00764 312 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 SCAMP3O14828 347 aaKnown RBP15.64■□□□□ 0.09
VPS28-215ENST00000531924 ACTN4O43707 911 aaKnown RBP15.64■□□□□ 0.09
VPS28-215ENST00000531924 CALUO43852 315 aaPredicted RBP15.64■□□□□ 0.09
VPS28-215ENST00000531924 RHOBTB1O94844 696 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 PFKFB1P16118 471 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 GBP1P32455 592 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 DGKEP52429 567 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 CACNA2D1P54289 1103 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 KRT85P78386 507 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 CCDC6Q16204 474 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 HECTD3Q5T447 861 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 FAM35AQ86V20 835 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 TTC30AQ86WT1 665 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 SLC9A9Q8IVB4 645 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 KIAA0895Q8NCT3 520 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 OVCA2Q8WZ82 227 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 DDX1Q92499 740 aaKnown RBP15.64■□□□□ 0.09
VPS28-215ENST00000531924 KCNK16Q96T55 309 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 DNAI2Q9GZS0 605 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 GZF1Q9H116 711 aaPredicted RBP15.64■□□□□ 0.09
VPS28-215ENST00000531924 VRTNQ9H8Y1 702 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 TBC1D14Q9P2M4 693 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 CHORDC1Q9UHD1 332 aaPredicted RBP15.64■□□□□ 0.09
VPS28-215ENST00000531924 SH3BP1Q9Y3L3 701 aa15.64■□□□□ 0.09
VPS28-215ENST00000531924 KIF26AQ9ULI4 1882 aaPredicted RBP15.63■□□□□ 0.09
VPS28-215ENST00000531924 KLRC4O43908 158 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 AP1G2O75843 785 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 EPN2O95208 641 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 OAS1P00973 400 aaKnown RBP15.63■□□□□ 0.09
VPS28-215ENST00000531924 C4BPAP04003 597 aaKnown RBP15.63■□□□□ 0.09
VPS28-215ENST00000531924 CYP17A1P05093 508 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 PIK3CAP42336 1068 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 SYKP43405 635 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 CLDN10P78369 228 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 DHCR24Q15392 516 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 USP39Q53GS9 565 aaKnown RBP15.63■□□□□ 0.09
VPS28-215ENST00000531924 BTBD8Q5XKL5 378 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 ACOT1Q86TX2 421 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 ADGRG2Q8IZP9 1017 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 PLEKHO2Q8TD55 490 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 TMC2Q8TDI7 906 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 TAF4BQ92750 862 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 PNKPQ96T60 521 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 IMPG2Q9BZV3 1241 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 KRT82Q9NSB4 513 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 DMAC2Q9NW81 257 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 EBF1Q9UH73 591 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 PCDHGA5Q9Y5G8 931 aa15.63■□□□□ 0.09
VPS28-215ENST00000531924 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.62■□□□□ 0.09
VPS28-215ENST00000531924 GDF9O60383 454 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms