RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 C12orf50Q8NA57 414 aaPredicted RBP12.09□□□□□ -0.47
VPS28-214ENST00000531032 B3GALNT2Q8NCR0 500 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 USP33Q8TEY7 942 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 ZNF518BQ9C0D4 1074 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 DUSP15Q9H1R2 295 aaPredicted RBP12.09□□□□□ -0.47
VPS28-214ENST00000531032 VRTNQ9H8Y1 702 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 RXFP3Q9NSD7 469 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 A8MXQ7 604 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 PSMD2Q13200 908 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 TRPC3Q13507 836 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 ELF2Q15723 593 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 KNOP1Q1ED39 458 aaKnown RBP12.08□□□□□ -0.48
VPS28-214ENST00000531032 TDRD10Q5VZ19 366 aaKnown RBP12.08□□□□□ -0.48
VPS28-214ENST00000531032 IL31Q6EBC2 164 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 FILIP1Q7Z7B0 1213 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 RASSF3Q86WH2 238 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 ADGRG2Q8IZP9 1017 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 PLEKHO2Q8TD55 490 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 SNX21Q969T3 373 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 SYAP1Q96A49 352 aaPredicted RBP12.08□□□□□ -0.48
VPS28-214ENST00000531032 SLITRK1Q96PX8 696 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 B3GNT5Q9BYG0 378 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 BLZF1Q9H2G9 400 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 SLC39A2Q9NP94 309 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 VPS45Q9NRW7 570 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 NXF1Q9UBU9 619 aaKnown RBP12.08□□□□□ -0.48
VPS28-214ENST00000531032 CPQQ9Y646 472 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 CACNA1BQ00975 2339 aa12.08□□□□□ -0.48
VPS28-214ENST00000531032 LAMA1P25391 3075 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 CNOT1A5YKK6 2376 aaKnown RBP12.07□□□□□ -0.48
VPS28-214ENST00000531032 CLDN5O00501 218 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 SLC9A3R1O14745 358 aaPredicted RBP12.07□□□□□ -0.48
VPS28-214ENST00000531032 DCLK1O15075 740 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 EXOC3O60645 756 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 RHOBTB1O94844 696 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 ZSCAN22P10073 491 aaPredicted RBP12.07□□□□□ -0.48
VPS28-214ENST00000531032 CHRM1P11229 460 aaPredicted RBP12.07□□□□□ -0.48
VPS28-214ENST00000531032 PDIA4P13667 645 aaKnown RBP12.07□□□□□ -0.48
VPS28-214ENST00000531032 EIF2DP41214 584 aaKnown RBP12.07□□□□□ -0.48
VPS28-214ENST00000531032 CASP4P49662 377 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 CLDN10P78369 228 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 CUL4BQ13620 913 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 DHCR24Q15392 516 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 STPG1Q5TH74 334 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 RESP18Q5W5W9 173 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 DDX42Q86XP3 938 aaKnown RBP eCLIP12.07□□□□□ -0.48
VPS28-214ENST00000531032 NUP93Q8N1F7 819 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 PDZD8Q8NEN9 1154 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 TSTD1Q8NFU3 115 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 GOLGA5Q8TBA6 731 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 TMEM174Q8WUU8 243 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 OVCA2Q8WZ82 227 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 SMOC1Q9H4F8 434 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 SMYD3Q9H7B4 428 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 SMPD4Q9NXE4 827 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 FAM13BQ9NYF5 915 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 MMP17Q9ULZ9 603 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 PCDHA7Q9UN72 937 aa12.07□□□□□ -0.48
VPS28-214ENST00000531032 CHD8Q9HCK8 2581 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 BCLAF3A2AJT9 711 aaKnown RBP12.06□□□□□ -0.48
VPS28-214ENST00000531032 ANTXRLA6NF34 631 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 KLRC4O43908 158 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 PHACTR2O75167 634 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 RTN3O95197 1032 aaPredicted RBP12.06□□□□□ -0.48
VPS28-214ENST00000531032 F13A1P00488 732 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 ABL1P00519 1130 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 YWHAQP27348 245 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 AFMP43652 599 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 ME1P48163 572 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 DGKEP52429 567 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 AP3M2P53677 418 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 SEC13P55735 322 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 MRPS21P82921 87 aaKnown RBP12.06□□□□□ -0.48
VPS28-214ENST00000531032 CRY1Q16526 586 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 ZNF699Q32M78 642 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 C2orf27AQ580R0 203 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 FOXD4L5Q5VV16 416 aaPredicted RBP12.06□□□□□ -0.48
VPS28-214ENST00000531032 SNX30Q5VWJ9 437 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 PMS2CLQ68D20 193 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 ATL3Q6DD88 541 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 RHBDF2Q6PJF5 856 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 PAQR9Q6ZVX9 377 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 FAM35AQ86V20 835 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 C11orf74Q86VG3 221 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 SLC9A9Q8IVB4 645 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 PARD3BQ8TEW8 1205 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 FOXD4L4Q8WXT5 416 aaPredicted RBP12.06□□□□□ -0.48
VPS28-214ENST00000531032 FBXO32Q969P5 355 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 ZFRQ96KR1 1074 aaKnown RBP12.06□□□□□ -0.48
VPS28-214ENST00000531032 CNOT6LQ96LI5 555 aaKnown RBP12.06□□□□□ -0.48
VPS28-214ENST00000531032 KCNK16Q96T55 309 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 DMAC2Q9NW81 257 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 IL37Q9NZH6 218 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 CFAP97Q9P2B7 532 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 ATP8B3O60423 1300 aa12.06□□□□□ -0.48
VPS28-214ENST00000531032 NUP205Q92621 2012 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 A0A0A0MRY4 1105 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 E2F8A0AVK6 867 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 FAM92AA1XBS5 289 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 LRRIQ3A6PVS8 624 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms