RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 EEF1DP3Q658K8 133 aa20.12■□□□□ 0.81
VPS28-213ENST00000530983 NPNTQ6UXI9 565 aa20.12■□□□□ 0.81
VPS28-213ENST00000530983 SLC4A11Q8NBS3 891 aa20.12■□□□□ 0.81
VPS28-213ENST00000530983 SERAC1Q96JX3 654 aa20.12■□□□□ 0.81
VPS28-213ENST00000530983 PEBP4Q96S96 227 aa20.12■□□□□ 0.81
VPS28-213ENST00000530983 TLE6Q9H808 572 aa20.12■□□□□ 0.81
VPS28-213ENST00000530983 SAR1AQ9NR31 198 aa20.12■□□□□ 0.81
VPS28-213ENST00000530983 GJA3Q9Y6H8 435 aa20.12■□□□□ 0.81
VPS28-213ENST00000530983 IGKV6-21A0A0C4DH24 114 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 TCRBV9S1A1TA0A576 114 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 KIF3CO14782 793 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 GJB1P08034 283 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 DHRS4L1P0CG22 281 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 CXCL8P10145 99 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 PTPN4P29074 926 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 C11orf91Q3C1V1 193 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 ZNF667Q5HYK9 610 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 ATF7IP2Q5U623 682 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 ANGEL2Q5VTE6 544 aaKnown RBP20.11■□□□□ 0.81
VPS28-213ENST00000530983 CAPRIN2Q6IMN6 1127 aaKnown RBP20.11■□□□□ 0.81
VPS28-213ENST00000530983 EEPD1Q7L9B9 569 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 STK32AQ8WU08 396 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 MCRS1Q96EZ8 462 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 FAM167AQ96KS9 214 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 MT-ND3P03897 115 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 ETV4P43268 484 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 MMRN1Q13201 1228 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 PTK7Q13308 1070 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 SMYD5Q6GMV2 418 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 LRRC6Q86X45 466 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 MICAL1Q8TDZ2 1067 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 C2orf40Q9H1Z8 148 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 SMYD3Q9H7B4 428 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 TEX264Q9Y6I9 313 aa20.11■□□□□ 0.81
VPS28-213ENST00000530983 KBTBD13C9JR72 458 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 ACKR2O00590 384 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 LPXNO60711 386 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 RNF8O76064 485 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 TPBGLP0DKB5 382 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 GABRB2P47870 512 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 NEK3P51956 506 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 PTPN11Q06124 597 aaPredicted RBP20.1■□□□□ 0.81
VPS28-213ENST00000530983 KCNJ11Q14654 390 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 KBTBD12Q3ZCT8 623 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 FAM182AQ5T1J6 154 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 SYCP2LQ5T4T6 812 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 SH2D5Q6ZV89 423 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 C1orf127Q8N9H9 656 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 SLC44A1Q8WWI5 657 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 MIPEPQ99797 713 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 ELOVL4Q9GZR5 314 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 FZD8Q9H461 694 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 RSAD1Q9HA92 442 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 BTBD7Q9P203 1132 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 PPME1Q9Y570 386 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 A0A0G2JND7 137 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 GAS2O43903 313 aaKnown RBP20.1■□□□□ 0.81
VPS28-213ENST00000530983 MICAL2O94851 1124 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 ROR1Q01973 937 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 ACAP1Q15027 740 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 NOMO1Q15155 1222 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 SH3PXD2AQ5TCZ1 1133 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 LBX2Q6XYB7 198 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 CYP4V2Q6ZWL3 525 aaPredicted RBP20.1■□□□□ 0.81
VPS28-213ENST00000530983 ZC3H18Q86VM9 953 aaKnown RBP20.1■□□□□ 0.81
VPS28-213ENST00000530983 TSSK1BQ9BXA7 367 aa20.1■□□□□ 0.81
VPS28-213ENST00000530983 DENND2DQ9H6A0 471 aaPredicted RBP20.1■□□□□ 0.81
VPS28-213ENST00000530983 IQANK1A0A1B0GTG1 560 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 EME2A4GXA9 379 aaPredicted RBP20.09■□□□□ 0.81
VPS28-213ENST00000530983 ENDOD1O94919 500 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 ARIH2O95376 493 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 NFICP08651 508 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 FAAP100Q0VG06 881 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 HSDL1Q3SXM5 330 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 RAB6CQ53S08 254 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 TREML2Q5T2D2 321 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 DARS2Q6PI48 645 aaKnown RBP20.09■□□□□ 0.81
VPS28-213ENST00000530983 CHSY1Q86X52 802 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 ENDOVQ8N8Q3 282 aaKnown RBP20.09■□□□□ 0.81
VPS28-213ENST00000530983 APOPT1Q96IL0 206 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 NLRP4Q96MN2 994 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 NUDCD1Q96RS6 583 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 TRIM55Q9BYV6 548 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 RAB6CQ9H0N0 254 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 CDT1Q9H211 546 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 KCNK13Q9HB14 408 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.09■□□□□ 0.81
VPS28-213ENST00000530983 PTPRFP10586 1907 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.09■□□□□ 0.81
VPS28-213ENST00000530983 INO80B-WBP1J3KQ70 363 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 CILPO75339 1184 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 AVILO75366 819 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 TGFB3P10600 412 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 STIP1P31948 543 aaKnown RBP20.09■□□□□ 0.81
VPS28-213ENST00000530983 PEX19P40855 299 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 ABL2P42684 1182 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 GPD2P43304 727 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 ZNF200P98182 395 aaPredicted RBP20.09■□□□□ 0.81
VPS28-213ENST00000530983 SLC18A2Q05940 514 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 WASHC2DQ5SRD0 308 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms