RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 AVPR1AP37288 418 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 PDK1Q15118 436 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 TRIP10Q15642 601 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 FAM182AQ5T1J6 154 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 TDRD10Q5VZ19 366 aaKnown RBP12.15□□□□□ -0.46
SYNPO-204ENST00000519664 ST13P4Q8IZP2 240 aaPredicted RBP12.15□□□□□ -0.46
SYNPO-204ENST00000519664 RIBC1Q8N443 379 aaPredicted RBP12.15□□□□□ -0.46
SYNPO-204ENST00000519664 NEUROG2Q9H2A3 272 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 MAP3K20Q9NYL2 800 aaKnown RBP12.15□□□□□ -0.46
SYNPO-204ENST00000519664 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.15□□□□□ -0.46
SYNPO-204ENST00000519664 HACD3Q9P035 362 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 TRIM33Q9UPN9 1127 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 ARHGEF37A1IGU5 675 aa12.15□□□□□ -0.47
SYNPO-204ENST00000519664 USP12O75317 370 aa12.15□□□□□ -0.47
SYNPO-204ENST00000519664 CHEK2O96017 543 aa12.15□□□□□ -0.47
SYNPO-204ENST00000519664 UBA1P22314 1058 aaKnown RBP12.15□□□□□ -0.47
SYNPO-204ENST00000519664 SKOR1P84550 965 aa12.15□□□□□ -0.47
SYNPO-204ENST00000519664 CYTH1Q15438 398 aa12.15□□□□□ -0.47
SYNPO-204ENST00000519664 ZCWPW2Q504Y3 356 aa12.15□□□□□ -0.47
SYNPO-204ENST00000519664 MOB2Q70IA6 237 aa12.15□□□□□ -0.47
SYNPO-204ENST00000519664 MSL3Q8N5Y2 521 aaKnown RBP12.15□□□□□ -0.47
SYNPO-204ENST00000519664 TFB1MQ8WVM0 346 aaKnown RBP12.15□□□□□ -0.47
SYNPO-204ENST00000519664 NSL1Q96IY1 281 aa12.15□□□□□ -0.47
SYNPO-204ENST00000519664 MAGEB18Q96M61 343 aa12.15□□□□□ -0.47
SYNPO-204ENST00000519664 FHDC1Q9C0D6 1143 aaPredicted RBP12.15□□□□□ -0.47
SYNPO-204ENST00000519664 ARMCX1Q9P291 453 aa12.15□□□□□ -0.47
SYNPO-204ENST00000519664 AFF4Q9UHB7 1163 aaKnown RBP12.15□□□□□ -0.47
SYNPO-204ENST00000519664 FSBPO95073 299 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 MT-CO1P00395 513 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 CDC25CP30307 473 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 ABCG1P45844 678 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 TAF6P49848 677 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 KLC1Q07866 573 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 ZNF235Q14590 738 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 SPATA2LQ8IUW3 424 aaPredicted RBP12.14□□□□□ -0.47
SYNPO-204ENST00000519664 EDEM1Q92611 657 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 AP4E1Q9UPM8 1137 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 PRRC2BQ5JSZ5 2229 aaKnown RBP12.14□□□□□ -0.47
SYNPO-204ENST00000519664 ZBBXA8MT70 800 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 LACTBL1A8MY62 500 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 KBTBD13C9JR72 458 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 DNALI1O14645 258 aaPredicted RBP12.14□□□□□ -0.47
SYNPO-204ENST00000519664 GSTA4O15217 222 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 AP1G2O75843 785 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 CD4P01730 458 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 APOEP02649 317 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 UBTFL6P0CB48 400 aaPredicted RBP12.14□□□□□ -0.47
SYNPO-204ENST00000519664 MAPTP10636 758 aaKnown RBP12.14□□□□□ -0.47
SYNPO-204ENST00000519664 TGM2P21980 687 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 ALDH5A1P51649 535 aaPredicted RBP12.14□□□□□ -0.47
SYNPO-204ENST00000519664 RPL10AP62906 217 aaKnown RBP12.14□□□□□ -0.47
SYNPO-204ENST00000519664 MAMLD1Q13495 774 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 AUHQ13825 339 aaKnown RBP12.14□□□□□ -0.47
SYNPO-204ENST00000519664 RCN1Q15293 331 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 ERO1BQ86YB8 467 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 ATPAF2Q8N5M1 289 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 ICA1LQ8NDH6 482 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 CCDC138Q96M89 665 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 ZCWPW1Q9H0M4 648 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 IL1RL2Q9HB29 575 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 PAIP2BQ9ULR5 123 aaKnown RBP12.14□□□□□ -0.47
SYNPO-204ENST00000519664 AURKCQ9UQB9 309 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 E5RJQ4 531 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 GOLGA8TH3BQL2 631 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 SKAP2O75563 359 aaPredicted RBP12.14□□□□□ -0.47
SYNPO-204ENST00000519664 CCNE2O96020 404 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 FAM200BP0CF97 657 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 TPH1P17752 444 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 SPRP35270 261 aaPredicted RBP12.14□□□□□ -0.47
SYNPO-204ENST00000519664 AQP5P55064 265 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 TAS2R40P59535 323 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 MCL1Q07820 350 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 EFHC1Q5JVL4 640 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 DENND1BQ6P3S1 775 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 ZCCHC23Q6ZST2 131 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 TAS2R42Q7RTR8 314 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 GALNT4Q8N4A0 578 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 CEP70Q8NHQ1 597 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 ELMO2Q96JJ3 720 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 CYP39A1Q9NYL5 469 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.14□□□□□ -0.47
SYNPO-204ENST00000519664 UBIAD1Q9Y5Z9 338 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 MYH2Q9UKX2 1941 aa12.14□□□□□ -0.47
SYNPO-204ENST00000519664 RGL2O15211 777 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 FANCGO15287 622 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 UPP2O95045 317 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 JCHAINP01591 159 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 AMPD1P23109 780 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 ESRRGP62508 458 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 EFTUD2Q15029 972 aaKnown RBP eCLIP12.13□□□□□ -0.47
SYNPO-204ENST00000519664 KYAT1Q16773 422 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 FAM117BQ6P1L5 589 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 NPNTQ6UXI9 565 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 ZNF662Q6ZS27 426 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 CPNE8Q86YQ8 564 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 MIB1Q86YT6 1006 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 EFHBQ8N7U6 833 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 LRRC15Q8TF66 581 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 DNAJC9Q8WXX5 260 aa12.13□□□□□ -0.47
SYNPO-204ENST00000519664 PRCCQ92733 491 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms