RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 PGM2Q96G03 612 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 DCLK3Q9C098 648 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 NDUFB9Q9Y6M9 179 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 DUOX2Q9NRD8 1548 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 LAMC3Q9Y6N6 1575 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 TRIM43BA6NCK2 446 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 SEMA3DO95025 777 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 CLTBP09497 229 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 HSMCR30P0CW71 290 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 SLC26A3P40879 764 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 ARHGDIBP52566 201 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 ELF3P78545 371 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 CHRNDQ07001 517 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 ENPEPQ07075 957 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 SLC15A2Q16348 729 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 TSGA10IPQ3SY00 556 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 COBLL1Q53SF7 1204 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 LAYNQ6UX15 382 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 ZBTB33Q86T24 672 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 ZNF605Q86T29 641 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 PM20D2Q8IYS1 436 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 ANKRD49Q8WVL7 239 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 FAM120BQ96EK7 910 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 NDNQ99608 321 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 KCTD14Q9BQ13 255 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 PNPLA3Q9NST1 481 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 GTF3C4Q9UKN8 822 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 PCDHB2Q9Y5E7 798 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 BCLAF3A2AJT9 711 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 H0YIN7 160 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 ECE2O60344 883 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 TBC1D12O60347 775 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 DGKIO75912 1065 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 RAPGEF3O95398 923 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 CYP2C8P10632 490 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 PAICSP22234 425 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 AQP5P55064 265 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 MCL1Q07820 350 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 SYTL3Q4VX76 610 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 RASSF6Q6ZTQ3 369 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 TMIEQ8NEW7 156 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 PHACTR1Q9C0D0 580 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 LATS2Q9NRM7 1088 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 GIN1Q9NXP7 522 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 NPM3O75607 178 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 RECQL5O94762 991 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 TSPAN19P0C672 248 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 HOXB8P17481 243 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 CASP5P51878 434 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 HK2P52789 917 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 CWF19L1Q69YN2 538 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 MRNIPQ6NTE8 343 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 ZCCHC8Q6NZY4 707 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 ABRAXAS1Q6UWZ7 409 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 ADHFE1Q8IWW8 467 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 DEFB107AQ8IZN7 70 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 CLHC1Q8NHS4 586 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 PROX1Q92786 737 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 MYDGFQ969H8 173 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 Q96MT0 163 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 C7orf25Q9BPX7 421 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 SLC25A23Q9BV35 468 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 MRPL4Q9BYD3 311 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 OSBPL6Q9BZF3 934 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 EFR3BQ9Y2G0 817 aa11.6□□□□□ -0.55
LIMCH1-208ENST00000508501 KDM5BQ9UGL1 1544 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 ZNF608Q9ULD9 1512 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 A0A0G2JPF8 293 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 METTL21EPA6NDL7 271 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 HNRNPCL3B7ZW38 293 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 HNRNPCL4P0DMR1 293 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 RBP3P10745 1247 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 HOXC8P31273 242 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 PHKA1P46020 1223 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 MTF1Q14872 753 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 ZSWIM7Q19AV6 140 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 RBM46Q8TBY0 533 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 EEF1AKMT1Q8WVE0 214 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 COX4I2Q96KJ9 171 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 DNAJC7Q99615 494 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 DRG1Q9Y295 367 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 MROH7-TTC4A0A0A0MT08 1334 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 TEX46H3BTG2 121 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 UCHL3P15374 230 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 ALOX15P16050 662 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 CDC25AP30304 524 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 SLC16A1P53985 500 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 NEDD8Q15843 81 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 EAPPQ56P03 285 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 THNSL1Q8IYQ7 743 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 CCDC185Q8N715 623 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 SNX31Q8N9S9 440 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 C1orf131Q8NDD1 294 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 KCNB2Q92953 911 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 CMTM6Q9NX76 183 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 STOX2Q9P2F5 926 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 ALG6Q9Y672 507 aa11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 A0A0A6YYK5 440 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-208ENST00000508501 M0R2C6 588 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms