RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 RASA4BC9J798 803 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 PRPF4O43172 522 aaKnown RBP eCLIP12.54□□□□□ -0.4
NUP54-202ENST00000502850 RASA4O43374 803 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 SPAG6O75602 509 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 ECM2O94769 699 aaPredicted RBP12.54□□□□□ -0.4
NUP54-202ENST00000502850 SUN1O94901 812 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 IL1R2P27930 398 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 SCNN1AP37088 669 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 IFNAR2P48551 515 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 EIF3EP60228 445 aaKnown RBP12.54□□□□□ -0.4
NUP54-202ENST00000502850 ROR1Q01973 937 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 TMED2Q15363 201 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 CCDC142Q17RM4 750 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 SMTNL2Q2TAL5 461 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 BOLA3Q53S33 107 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 ANKRD20A8PQ5CZ79 823 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 TMEM63BQ5T3F8 832 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 NOTUMQ6P988 496 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 C4orf22Q6V702 233 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 IFNL1Q8IU54 200 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 ZBED8Q8IZ13 594 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.54□□□□□ -0.4
NUP54-202ENST00000502850 STK32AQ8WU08 396 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 HAUS1Q96CS2 278 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 SNX27Q96L92 541 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 VPS37BQ9H9H4 285 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 SSU72Q9NP77 194 aaKnown RBP12.54□□□□□ -0.4
NUP54-202ENST00000502850 CYLDQ9NQC7 956 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 PSMC3IPQ9P2W1 217 aaPredicted RBP12.54□□□□□ -0.4
NUP54-202ENST00000502850 HMGXB4Q9UGU5 601 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 NRCAMQ92823 1304 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 ENDOD1O94919 500 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 TGM2P21980 687 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 GBP2P32456 591 aaPredicted RBP12.53□□□□□ -0.4
NUP54-202ENST00000502850 DYNLT1P63172 113 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 PDIA2Q13087 525 aaKnown RBP12.53□□□□□ -0.4
NUP54-202ENST00000502850 KRT81Q14533 505 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 FAM110CQ1W6H9 321 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 GOLGA7BQ2TAP0 167 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 OR6B2Q6IFH4 312 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 CATSPER4Q7RTX7 472 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 GPR142Q7Z601 462 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 PLEKHH3Q7Z736 793 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 SRRM1Q8IYB3 904 aaKnown RBP12.53□□□□□ -0.4
NUP54-202ENST00000502850 KIAA0319LQ8IZA0 1049 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 PDIK1LQ8N165 341 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 ARFGAP1Q8N6T3 406 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 EMC1Q8N766 993 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 CCT6BQ92526 530 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 ACSF2Q96CM8 615 aaPredicted RBP12.53□□□□□ -0.4
NUP54-202ENST00000502850 ZBTB10Q96DT7 871 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 MAML3Q96JK9 1138 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 ZNF560Q96MR9 790 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 SMC6Q96SB8 1091 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 TINF2Q9BSI4 451 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 CALN1Q9BXU9 219 aa12.53□□□□□ -0.4
NUP54-202ENST00000502850 USP15Q9Y4E8 981 aaPredicted RBP12.53□□□□□ -0.4
NUP54-202ENST00000502850 SMIM35A0A1B0GVV1 85 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 SLC15A5A6NIM6 579 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 BTBD19C9JJ37 291 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 E7ESA3 106 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 NPTXRO95502 500 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 SNAI1O95863 264 aaPredicted RBP12.52□□□□□ -0.4
NUP54-202ENST00000502850 CD4P01730 458 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 ZSCAN5DPP0CG00 497 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 PDGFRAP16234 1089 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 SDC4P31431 198 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 PNPLA4P41247 253 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 CDH6P55285 790 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 RNASELQ05823 741 aaKnown RBP12.52□□□□□ -0.4
NUP54-202ENST00000502850 ACVR2BQ13705 512 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 NOMO1Q15155 1222 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 KCNT1Q5JUK3 1230 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 GJC2Q5T442 439 aaPredicted RBP12.52□□□□□ -0.4
NUP54-202ENST00000502850 ARHGAP17Q68EM7 881 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 FAM183BPQ6ZVS7 135 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 TRABD2AQ86V40 505 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 ANKRD42Q8N9B4 389 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 NAT8LQ8N9F0 302 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 GLIS1Q8NBF1 620 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 SPATA18Q8TC71 538 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 PYROXD1Q8WU10 500 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 RXFP2Q8WXD0 754 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 MAML1Q92585 1016 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 HSPH1Q92598 858 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.52□□□□□ -0.4
NUP54-202ENST00000502850 CTNNAL1Q9UBT7 734 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 PCSK1NQ9UHG2 260 aa12.52□□□□□ -0.4
NUP54-202ENST00000502850 UBQLN1Q9UMX0 589 aaKnown RBP12.52□□□□□ -0.4
NUP54-202ENST00000502850 TCP11X1B4DZS4 312 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 E5RJQ4 531 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 IGF2BP3O00425 579 aaKnown RBP eCLIP12.51□□□□□ -0.41
NUP54-202ENST00000502850 SNX3O60493 162 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 FKTNO75072 461 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 DNAJC8O75937 253 aaPredicted RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 OAS1P00973 400 aaKnown RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 RBP3P10745 1247 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 ETS1P14921 441 aa12.51□□□□□ -0.41
NUP54-202ENST00000502850 ZFXP17010 805 aaPredicted RBP12.51□□□□□ -0.41
NUP54-202ENST00000502850 SMPD1P17405 629 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms