RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 PKNOX1P55347 436 aa13.33□□□□□ -0.28
SHOX2-205ENST00000490689 MYL6P60660 151 aa13.33□□□□□ -0.28
SHOX2-205ENST00000490689 MRPS22P82650 360 aaKnown RBP13.33□□□□□ -0.28
SHOX2-205ENST00000490689 RSBN1LQ6PCB5 846 aaPredicted RBP13.33□□□□□ -0.28
SHOX2-205ENST00000490689 KATNAL2Q8IYT4 538 aa13.33□□□□□ -0.28
SHOX2-205ENST00000490689 JPH1Q9HDC5 661 aaPredicted RBP13.33□□□□□ -0.28
SHOX2-205ENST00000490689 MAN1C1Q9NR34 630 aa13.33□□□□□ -0.28
SHOX2-205ENST00000490689 ATF5Q9Y2D1 282 aaPredicted RBP13.33□□□□□ -0.28
SHOX2-205ENST00000490689 FNDC3AQ9Y2H6 1198 aaKnown RBP13.33□□□□□ -0.28
SHOX2-205ENST00000490689 COL5A2P05997 1499 aaPredicted RBP13.33□□□□□ -0.28
SHOX2-205ENST00000490689 PSMD10O75832 226 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 GYS1P13807 737 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 NELFEP18615 380 aaKnown RBP13.32□□□□□ -0.28
SHOX2-205ENST00000490689 PMLP29590 882 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 TLDC1Q6P9B6 456 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 CES3Q6UWW8 571 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 HHIPL2Q6UWX4 724 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 TRIM67Q6ZTA4 783 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 OR6Y1Q8NGX8 325 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 TRAPPC9Q96Q05 1148 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 ZNF302Q9NR11 478 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 AFG3L2Q9Y4W6 797 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 MYH7P12883 1935 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 CYP3A7-CYP3A51PA0A087WV96 503 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 CYB561D2O14569 222 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 SPAG6O75602 509 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 CYP3A7P24462 503 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 CCNFP41002 786 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 ABCG1P45844 678 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 RAP1GAPP47736 663 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 GLRBP48167 497 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 N4BP2L1Q5TBK1 243 aaPredicted RBP13.32□□□□□ -0.28
SHOX2-205ENST00000490689 PDPK2PQ6A1A2 396 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 NPNTQ6UXI9 565 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 GALNT15Q8N3T1 639 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 ZSCAN18Q8TBC5 510 aaPredicted RBP13.32□□□□□ -0.28
SHOX2-205ENST00000490689 WDR60Q8WVS4 1066 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 CCDC134Q9H6E4 229 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 TASP1Q9H6P5 420 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 AVENQ9NQS1 362 aaPredicted RBP13.32□□□□□ -0.28
SHOX2-205ENST00000490689 BFARQ9NZS9 450 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 PYGLP06737 847 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 NR3C2P08235 984 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 STIP1P31948 543 aaKnown RBP13.32□□□□□ -0.28
SHOX2-205ENST00000490689 PPIDQ08752 370 aaKnown RBP13.32□□□□□ -0.28
SHOX2-205ENST00000490689 CCDC15Q0P6D6 951 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 SP8Q8IXZ3 490 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 GLIS1Q8NBF1 620 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 CDHR1Q96JP9 859 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 SLITRK1Q96PX8 696 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 DMAP1Q9NPF5 467 aaPredicted RBP13.32□□□□□ -0.28
SHOX2-205ENST00000490689 CISHQ9NSE2 258 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 GALNT8Q9NY28 637 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 STX18Q9P2W9 335 aaKnown RBP13.32□□□□□ -0.28
SHOX2-205ENST00000490689 VAV3Q9UKW4 847 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 SNX13Q9Y5W8 968 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 MT-CO1P00395 513 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 ALADP13716 330 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 MYBPC2Q14324 1141 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 EMC2Q15006 297 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 FAM160B1Q5W0V3 765 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 CIAPIN1Q6FI81 312 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 POTEAQ6S8J7 498 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 CDKL3Q8IVW4 592 aaPredicted RBP13.32□□□□□ -0.28
SHOX2-205ENST00000490689 ZNF333Q96JL9 665 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 SIKE1Q9BRV8 207 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 NIF3L1Q9GZT8 377 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 ING2Q9H160 280 aa13.32□□□□□ -0.28
SHOX2-205ENST00000490689 RGPD2P0DJD1 1756 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 ALOX15BO15296 676 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 LYPLA1O75608 230 aaPredicted RBP13.31□□□□□ -0.28
SHOX2-205ENST00000490689 NPTXRO95502 500 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 NPR1P16066 1061 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 NEK3P51956 506 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 HDAC4P56524 1084 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 CRADDP78560 199 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 ACVR2BQ13705 512 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 EGFL6Q8IUX8 553 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 ALLCQ8N6M5 410 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 TMC2Q8TDI7 906 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 DRC3Q9H069 523 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 COPS7BQ9H9Q2 264 aaPredicted RBP13.31□□□□□ -0.28
SHOX2-205ENST00000490689 TMEM165Q9HC07 324 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 IL1RAPL1Q9NZN1 696 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 V9GYQ6 96 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 ABHD2P08910 425 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 HSPA8P11142 646 aaKnown RBP13.31□□□□□ -0.28
SHOX2-205ENST00000490689 TFE3P19532 575 aaPredicted RBP13.31□□□□□ -0.28
SHOX2-205ENST00000490689 POU5F1Q01860 360 aaKnown RBP13.31□□□□□ -0.28
SHOX2-205ENST00000490689 GCNT1Q02742 428 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 PLOD1Q02809 727 aaPredicted RBP13.31□□□□□ -0.28
SHOX2-205ENST00000490689 PDK3Q15120 406 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 NRF1Q16656 503 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 PDZD4Q76G19 769 aaPredicted RBP13.31□□□□□ -0.28
SHOX2-205ENST00000490689 ZNF786Q8N393 782 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 NSUN6Q8TEA1 469 aaKnown RBP13.31□□□□□ -0.28
SHOX2-205ENST00000490689 CCDC90BQ9GZT6 254 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 AK5Q9Y6K8 562 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 RALBP11234 206 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 TPP2P29144 1249 aaPredicted RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms