RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	OTOL1	A6NHN0	477 aa	Predicted RBP	11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	TAF4	O00268	1085 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	CDX4	O14627	284 aa	Predicted RBP	11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	GABRD	O14764	452 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	KIAA0391	O15091	583 aa	Known RBP	11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	TGFB1I1	O43294	461 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	CST3	P01034	146 aa	Predicted RBP	11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	ZSCAN22	P10073	491 aa	Predicted RBP	11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	ARSA	P15289	507 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	TNNI1	P19237	187 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	CSRP1	P21291	193 aa	Known RBP	11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	PCSK1	P29120	753 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	WEE1	P30291	646 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	AFM	P43652	599 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	RPL10A	P62906	217 aa	Known RBP	11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	PLCB2	Q00722	1185 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	GRSF1	Q12849	480 aa	Known RBP eCLIP	11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	SURF1	Q15526	300 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	TMEM196	Q5HYL7	178 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	CC2D1A	Q6P1N0	951 aa	Predicted RBP	11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	EPM2AIP1	Q7L775	607 aa	Predicted RBP	11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	TRAPPC11	Q7Z392	1133 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	MON1A	Q86VX9	555 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	HSCB	Q8IWL3	235 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	GRAMD1C	Q8IYS0	662 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	CAMKK1	Q8N5S9	505 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	RIN3	Q8TB24	985 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	LEO1	Q8WVC0	666 aa	Predicted RBP	11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	SNX21	Q969T3	373 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	CCDC127	Q96BQ5	260 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	SLC22A12	Q96S37	553 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	C7orf25	Q9BPX7	421 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	FAM83C	Q9BQN1	747 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	SYT15	Q9BQS2	421 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	SLC39A2	Q9NP94	309 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	HPS4	Q9NQG7	708 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	AGPAT3	Q9NRZ7	376 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	TDP1	Q9NUW8	608 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	KLK13	Q9UKR3	277 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	PCDHA7	Q9UN72	937 aa		11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	HELZ	P42694	1942 aa	Known RBP	11.31	□□□□□ -0.6
HMGN1-215	ENST00000485550	TRDMT1	O14717	391 aa	Known RBP	11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	KHNYN	O15037	678 aa	Known RBP	11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	EIF3D	O15371	548 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	TADA3	O75528	432 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	NOL4	O94818	638 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	F13A1	P00488	732 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	NUDT7	P0C024	238 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	BDNF	P23560	247 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	DDX6	P26196	483 aa	Known RBP eCLIP	11.3	□□□□□ -0.6	1e-5	■■■□□ 17.8
HMGN1-215	ENST00000485550	ME1	P48163	572 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	DGKE	P52429	567 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	CYP27A1	Q02318	531 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	CUL4B	Q13620	913 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	RUNX3	Q13761	415 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	PKP1	Q13835	747 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	SNRNP35	Q16560	246 aa	Known RBP	11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	NAIF1	Q69YI7	327 aa	Predicted RBP	11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	FAM171B	Q6P995	826 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	UNC13D	Q70J99	1090 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	DPH6	Q7L8W6	267 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	WDR49	Q8IV35	697 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	RPLP0P6	Q8NHW5	317 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	SCFD1	Q8WVM8	642 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	KBTBD7	Q8WVZ9	684 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	MYLPF	Q96A32	169 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	FNBP1	Q96RU3	617 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	MRPL45	Q9BRJ2	306 aa	Known RBP	11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	KIAA1586	Q9HCI6	787 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	FBRSL1	Q9HCM7	1045 aa	Known RBP	11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	ABCB6	Q9NP58	842 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	CRTAC1	Q9NQ79	661 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	FAM13B	Q9NYF5	915 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	MAGEC2	Q9UBF1	373 aa	Predicted RBP	11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	UXT	Q9UBK9	157 aa	Predicted RBP	11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	PLXND1	Q9Y4D7	1925 aa		11.3	□□□□□ -0.6
HMGN1-215	ENST00000485550	PTPRB	P23467	1997 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	CLSTN1	O94985	981 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	ZIC2	O95409	532 aa	Predicted RBP	11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	GNL1	P36915	607 aa	Predicted RBP	11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	GRIK1	P39086	918 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	GALK1	P51570	392 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	IRX4	P78413	519 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	DNM1	Q05193	864 aa	Known RBP	11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	CYP24A1	Q07973	514 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	PSMD2	Q13200	908 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	CFAP221	Q4G0U5	840 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	C19orf48	Q6RUI8	117 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	C4orf50	Q6ZRC1	276 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	ARL14EP	Q8N8R7	260 aa	Predicted RBP	11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	XXYLT1	Q8NBI6	393 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	OR6B3	Q8NGW1	331 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	ZNF516	Q92618	1163 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	ELMO3	Q96BJ8	720 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	CGRRF1	Q99675	332 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	TPSD1	Q9BZJ3	242 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	SNX25	Q9H3E2	840 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	SERTAD1	Q9UHV2	236 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	ZMYM5	Q9UJ78	669 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	CDH9	Q9ULB4	789 aa		11.29	□□□□□ -0.6

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