RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SORCS3Q9UPU3 1222 aa7.41□□□□□ -1.22
CCDC88A-213ENST00000476903 TCHHQ07283 1943 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 TMEM238LA0A1B0GVL6 79 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 PODXLO00592 558 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 RFPL2O75678 378 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 MYBP10242 640 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 MARCKSP29966 332 aaPredicted RBP7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 RPL9P32969 192 aaKnown RBP7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 DDIT3P35638 169 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 LIG4P49917 911 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 ZNF131P52739 623 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 PTPAQ15257 358 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 KYAT1Q16773 422 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 LIN9Q5TKA1 542 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 ANKS3Q6ZW76 656 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 SUGP1Q8IWZ8 645 aaKnown RBP7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 FEZF2Q8TBJ5 459 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 LARP4BQ92615 738 aaKnown RBP7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 KIRREL1Q96J84 757 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 EPSTI1Q96J88 318 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 ZBTB45Q96K62 511 aaPredicted RBP7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 ZMAT2Q96NC0 199 aaKnown RBP7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 CLSTN3Q9BQT9 956 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 ZHX3Q9H4I2 956 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 ZSCAN16Q9H4T2 348 aaPredicted RBP7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 PLEKHA5Q9HAU0 1116 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 WDR6Q9NNW5 1121 aaKnown RBP7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 MTRRQ9UBK8 725 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 FBXO2Q9UK22 296 aaPredicted RBP7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 FBXW11Q9UKB1 542 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 TBX20Q9UMR3 447 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 SRPRBQ9Y5M8 271 aaKnown RBP7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 CLUHO75153 1309 aa7.4□□□□□ -1.22
CCDC88A-213ENST00000476903 MUC6Q6W4X9 2439 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 ZDBF2Q9HCK1 2354 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 HNRNPDLO14979 420 aaKnown RBP7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 STX6O43752 255 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 PIGRP01833 764 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 ASGR2P07307 311 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 CLTAP09496 248 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 HNRNPA1P09651 372 aaKnown RBP eCLIP7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 CXCL8P10145 99 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 TKTP29401 623 aaKnown RBP7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 HOXA9P31269 272 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 GBP2P32456 591 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 NTF4P34130 210 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 CEBPZQ03701 1054 aaKnown RBP7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 PPP2R3AQ06190 1150 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 SLC10A6Q3KNW5 377 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 SEZ6Q53EL9 994 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 SPECC1Q5M775 1068 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 PPM1LQ5SGD2 360 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 RRAGBQ5VZM2 374 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 FAM173BQ6P4H8 233 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 CD300LGQ6UXG3 332 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 RNF214Q8ND24 703 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 C3orf58Q8NDZ4 430 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 STK35Q8TDR2 534 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 LRRC15Q8TF66 581 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 SNX21Q969T3 373 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 C18orf25Q96B23 403 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 ZNF707Q96C28 371 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 MTMR6Q9Y217 621 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 NUB1Q9Y5A7 615 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 BACE2Q9Y5Z0 518 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 MORC2Q9Y6X9 1032 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 NOTCH4Q99466 2003 aa7.39□□□□□ -1.23
CCDC88A-213ENST00000476903 H7C4K7 107 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 I3L4J1 428 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 SYN3O14994 580 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 OGTO15294 1046 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 MEFVO15553 781 aaPredicted RBP7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 ADAM12O43184 909 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 XPOTO43592 962 aaKnown RBP7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 N4BP1O75113 896 aaKnown RBP7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 HSP90AA1P07900 732 aaKnown RBP7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 PDIA4P13667 645 aaKnown RBP7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 IGFBP6P24592 240 aaPredicted RBP7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 NMT1P30419 496 aaKnown RBP7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 MCM4P33991 863 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 OR1D2P34982 312 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 TNFSF9P41273 254 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 BRCC3P46736 316 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 GTF2BQ00403 316 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 ORC1Q13415 861 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 TDGQ13569 410 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 RAB33AQ14088 237 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 SLC39A14Q15043 492 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 AXDND1Q5T1B0 1012 aaPredicted RBP7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 SLFN12LQ6IEE8 588 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 CCDC73Q6ZRK6 1079 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 USP49Q70CQ1 688 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 SV2BQ7L1I2 683 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 RTL10Q7L3V2 364 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 HSCBQ8IWL3 235 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 SLC7A14Q8TBB6 771 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 HVCN1Q96D96 273 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 CLIC6Q96NY7 704 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 USP28Q96RU2 1077 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 TSPAN18Q96SJ8 248 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms