RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 RARRES1P49788 294 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 RPL10AP62906 217 aaKnown RBP8.68□□□□□ -1.02
USP54-211ENST00000474929 GAD2Q05329 585 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 GAB4Q2WGN9 574 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 ZNF568Q3ZCX4 644 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 C10orf76Q5T2E6 689 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 RAB11FIP4Q86YS3 637 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 DCP1BQ8IZD4 617 aaKnown RBP8.68□□□□□ -1.02
USP54-211ENST00000474929 EXD3Q8N9H8 876 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 GIPC2Q8TF65 315 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 DEPDC7Q96QD5 511 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 NUP58Q9BVL2 599 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 TMPRSS4Q9NRS4 437 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.68□□□□□ -1.02
USP54-211ENST00000474929 TBC1D14Q9P2M4 693 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 DEC1Q9P2X7 70 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 EIF2B4Q9UI10 523 aaKnown RBP8.68□□□□□ -1.02
USP54-211ENST00000474929 MAGED2Q9UNF1 606 aaPredicted RBP8.68□□□□□ -1.02
USP54-211ENST00000474929 H0Y8X5 98 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 NPC1O15118 1278 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 USO1O60763 962 aaKnown RBP8.67□□□□□ -1.02
USP54-211ENST00000474929 NOL4O94818 638 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 IGLV3-19P01714 112 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 MCF2P10911 925 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 XRCC6P12956 609 aaKnown RBP eCLIP8.67□□□□□ -1.02
USP54-211ENST00000474929 CKMT2P17540 419 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 POU3F2P20265 443 aaPredicted RBP8.67□□□□□ -1.02
USP54-211ENST00000474929 CYP3A5P20815 502 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 RBMS1P29558 406 aaKnown RBP8.67□□□□□ -1.02
USP54-211ENST00000474929 TNFSF9P41273 254 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 ARRB1P49407 418 aaPredicted RBP8.67□□□□□ -1.02
USP54-211ENST00000474929 CSNK1EP49674 416 aaKnown RBP8.67□□□□□ -1.02
USP54-211ENST00000474929 C21orf59P57076 290 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 NFKB2Q00653 900 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 NFE2Q16621 373 aaPredicted RBP8.67□□□□□ -1.02
USP54-211ENST00000474929 ARL13BQ3SXY8 428 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 EEF1DP3Q658K8 133 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 NCAPH2Q6IBW4 605 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 ATCAYQ86WG3 371 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 METTL23Q86XA0 190 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 SLFN12Q8IYM2 578 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 FAM177A1Q8N128 213 aaPredicted RBP8.67□□□□□ -1.02
USP54-211ENST00000474929 THEM5Q8N1Q8 247 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 OXR1Q8N573 874 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 NSUN7Q8NE18 718 aaKnown RBP8.67□□□□□ -1.02
USP54-211ENST00000474929 C1orf216Q8TAB5 229 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 SNX19Q92543 992 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 MYO18AQ92614 2054 aaKnown RBP8.67□□□□□ -1.02
USP54-211ENST00000474929 GRAMD1AQ96CP6 724 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 VCPIP1Q96JH7 1222 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 IFT74Q96LB3 600 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 MYRFLQ96LU7 910 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 CCNL2Q96S94 520 aaPredicted RBP8.67□□□□□ -1.02
USP54-211ENST00000474929 TSPAN18Q96SJ8 248 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 ZCWPW1Q9H0M4 648 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 SLC25A18Q9H1K4 315 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 ABI2Q9NYB9 513 aaPredicted RBP8.67□□□□□ -1.02
USP54-211ENST00000474929 EHD2Q9NZN4 543 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 ANAPC2Q9UJX6 822 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 PCDHB5Q9Y5E4 795 aa8.67□□□□□ -1.02
USP54-211ENST00000474929 TIMM13Q9Y5L4 95 aaPredicted RBP8.67□□□□□ -1.02
USP54-211ENST00000474929 TMEM131Q92545 1883 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 BTBD18B2RXH4 712 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 HOXC11O43248 304 aaPredicted RBP8.66□□□□□ -1.02
USP54-211ENST00000474929 MT-CO3P00414 261 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 CYP11A1P05108 521 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 ACADMP11310 421 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 ITGB6P18564 788 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 LIG1P18858 919 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 HDCP19113 662 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 CTSKP43235 329 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 FOSBP53539 338 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 CLDN6P56747 220 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 INSM1Q01101 510 aaPredicted RBP8.66□□□□□ -1.02
USP54-211ENST00000474929 DNAJC3Q13217 504 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 KDM7AQ6ZMT4 941 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 USP53Q70EK8 1073 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 FILIP1Q7Z7B0 1213 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 TPH2Q8IWU9 490 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 ADGRG2Q8IZP9 1017 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 PHTF2Q8N3S3 785 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 ARL14EPQ8N8R7 260 aaPredicted RBP8.66□□□□□ -1.02
USP54-211ENST00000474929 SCFD1Q8WVM8 642 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 C18orf25Q96B23 403 aaPredicted RBP8.66□□□□□ -1.02
USP54-211ENST00000474929 DYDC2Q96IM9 177 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 ZMAT2Q96NC0 199 aaKnown RBP8.66□□□□□ -1.02
USP54-211ENST00000474929 ELF4Q99607 663 aaPredicted RBP8.66□□□□□ -1.02
USP54-211ENST00000474929 ACE2Q9BYF1 805 aaPredicted RBP8.66□□□□□ -1.02
USP54-211ENST00000474929 CDT1Q9H211 546 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 ADNPQ9H2P0 1102 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 LINC00597Q9H2U6 94 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 PLEKHA5Q9HAU0 1116 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 CD248Q9HCU0 757 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 ABCB6Q9NP58 842 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 KCNMB3Q9NPA1 279 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 ITM2CQ9NQX7 267 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 SH3GLB2Q9NR46 395 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 EVA1BQ9NVM1 165 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 GCNT4Q9P109 453 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 TJP2Q9UDY2 1190 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms