RNA–Protein interactions for RNA: ENST00000474319.1

LSS-208, Transcript of lanosterol synthase, human

TSL 2

Gene LSS, Length 3,601 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSS-208	ENST00000474319	PHKA2	P46019	1235 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	CDH6	P55285	790 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	ZNF699	Q32M78	642 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	ACSBG2	Q5FVE4	666 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	RNF149	Q8NC42	400 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	TRIM11	Q96F44	468 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	WDR83	Q9BRX9	315 aa	Known RBP	11.22	□□□□□ -0.61
LSS-208	ENST00000474319	LGALS13	Q9UHV8	139 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	STARD13	Q9Y3M8	1113 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	ZMPSTE24	O75844	475 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	SMNDC1	O75940	238 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
LSS-208	ENST00000474319	LINGO3	P0C6S8	592 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	CCND2	P30279	289 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	TSNAXIP1	Q2TAA8	658 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	PTPN20	Q4JDL3	420 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	POLN	Q7Z5Q5	900 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	C12orf56	Q8IXR9	622 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	ANKRD13A	Q8IZ07	590 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	ATP11C	Q8NB49	1132 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	TMEM35B	Q8NCS4	154 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	VTI1A	Q96AJ9	217 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	LRMDA	Q9H2I8	198 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	ACAD9	Q9H845	621 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	AVEN	Q9NQS1	362 aa	Predicted RBP	11.22	□□□□□ -0.61
LSS-208	ENST00000474319	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
LSS-208	ENST00000474319	BTBD7	Q9P203	1132 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	KANSL3	Q9P2N6	904 aa		11.22	□□□□□ -0.61
LSS-208	ENST00000474319	NVL	O15381	856 aa	Known RBP	11.21	□□□□□ -0.61
LSS-208	ENST00000474319	STK10	O94804	968 aa	Known RBP	11.21	□□□□□ -0.61
LSS-208	ENST00000474319	CCNB1	P14635	433 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	ATP4A	P20648	1035 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	PGM1	P36871	562 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	BIRC2	Q13490	618 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319		Q3C1V9	767 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	FAM102A	Q5T9C2	384 aa	Predicted RBP	11.21	□□□□□ -0.61
LSS-208	ENST00000474319	SYDE1	Q6ZW31	735 aa	Predicted RBP	11.21	□□□□□ -0.61
LSS-208	ENST00000474319	AGGF1	Q8N302	714 aa	eCLIP	11.21	□□□□□ -0.61	5e-22	■■■■■ 62.8
LSS-208	ENST00000474319	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	11.21	□□□□□ -0.61	4e-7	■■□□□ 11.9
LSS-208	ENST00000474319	DENND1A	Q8TEH3	1009 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	SCG3	Q8WXD2	468 aa	Known RBP	11.21	□□□□□ -0.61
LSS-208	ENST00000474319	PIWIL1	Q96J94	861 aa	Known RBP	11.21	□□□□□ -0.61
LSS-208	ENST00000474319	FAM81B	Q96LP2	452 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	NRXN2	Q9P2S2	1712 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	LOC100653049	A0A140TA62	436 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	CXorf49	A8MYA2	514 aa	Predicted RBP	11.21	□□□□□ -0.61
LSS-208	ENST00000474319	KCNN4	O15554	427 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	KRT34	O76011	436 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	GNAT1	P11488	350 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	MMP8	P22894	467 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	CDKN2B	P42772	138 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	UBAP2L	Q14157	1087 aa	Known RBP	11.21	□□□□□ -0.61
LSS-208	ENST00000474319	PLEKHA7	Q6IQ23	1121 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	MCPH1	Q8NEM0	835 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	CCDC110	Q8TBZ0	833 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	PRPF31	Q8WWY3	499 aa	Known RBP	11.21	□□□□□ -0.61
LSS-208	ENST00000474319	APOL6	Q9BWW8	343 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319	CYTH4	Q9UIA0	394 aa		11.21	□□□□□ -0.61
LSS-208	ENST00000474319		M0QYV0	167 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	NOP56	O00567	594 aa	Known RBP	11.21	□□□□□ -0.62
LSS-208	ENST00000474319	FCHO1	O14526	889 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	TXNDC9	O14530	226 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	COPE	O14579	308 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	SORBS2	O94875	1100 aa	Known RBP	11.21	□□□□□ -0.62
LSS-208	ENST00000474319	YARS	P54577	528 aa	Known RBP	11.21	□□□□□ -0.62
LSS-208	ENST00000474319	CHI3L2	Q15782	390 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	AMHR2	Q16671	573 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	OR6B2	Q6IFH4	312 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	GRAMD1A	Q96CP6	724 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	MOCOS	Q96EN8	888 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	CPXM1	Q96SM3	734 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	MIS12	Q9H081	205 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	ZNF302	Q9NR11	478 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	ANKEF1	Q9NU02	776 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	PGAP2	Q9UHJ9	254 aa		11.21	□□□□□ -0.62
LSS-208	ENST00000474319	SMG5	Q9UPR3	1016 aa	Known RBP	11.21	□□□□□ -0.62
LSS-208	ENST00000474319	TCRBV9S1A1T	A0A576	114 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	LRCH4	O75427	683 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	LYPLA1	O75608	230 aa	Predicted RBP	11.2	□□□□□ -0.62
LSS-208	ENST00000474319	ALAD	P13716	330 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	PHB	P35232	272 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	NEK3	P51956	506 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	SLC8A3	P57103	927 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	LMNB2	Q03252	620 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	KCTD2	Q14681	263 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	PSMD6	Q15008	389 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	CES3	Q6UWW8	571 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	CCNJL	Q8IV13	435 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	WDTC1	Q8N5D0	677 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	NSUN6	Q8TEA1	469 aa	Known RBP	11.2	□□□□□ -0.62
LSS-208	ENST00000474319	NRG4	Q8WWG1	115 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	SLCO2A1	Q92959	643 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	LPIN3	Q9BQK8	851 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	TXNRD2	Q9NNW7	524 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	CCDC189	A1A4V9	331 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	MCF2L	O15068	1137 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	ALOX15B	O15296	676 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	TYROBP	O43914	113 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	TBX10	O75333	385 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	PDE5A	O76074	875 aa		11.2	□□□□□ -0.62
LSS-208	ENST00000474319	ETS2	P15036	469 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms