RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 SMYD3Q9H7B4 428 aa21.02■□□□□ 0.96
COL9A3-210ENST00000472880 VRTNQ9H8Y1 702 aa21.02■□□□□ 0.96
COL9A3-210ENST00000472880 POLR3BQ9NW08 1133 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-210ENST00000472880 SMPD4Q9NXE4 827 aa21.02■□□□□ 0.96
COL9A3-210ENST00000472880 CPQQ9Y646 472 aa21.02■□□□□ 0.96
COL9A3-210ENST00000472880 MYO16Q9Y6X6 1858 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 RALGAPA1Q6GYQ0 2036 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 LRRIQ3A6PVS8 624 aaPredicted RBP21.01■□□□□ 0.95
COL9A3-210ENST00000472880 CLDN5O00501 218 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 SLC30A4O14863 429 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 AXIN1O15169 862 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 ACTN4O43707 911 aaKnown RBP21.01■□□□□ 0.95
COL9A3-210ENST00000472880 APBB3O95704 486 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 ZXDBP98169 803 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 NCOA4Q13772 614 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 DMC1Q14565 340 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 SCARA5Q6ZMJ2 495 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 KBTBD6Q86V97 674 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 SPRYD3Q8NCJ5 442 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 KIAA0895Q8NCT3 520 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 PDZD8Q8NEN9 1154 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 PLEKHO2Q8TD55 490 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 PARD3BQ8TEW8 1205 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 PAGE5Q96GU1 130 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 MED10Q9BTT4 135 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 ARRDC1-AS1Q9H2J1 176 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 TMEM30AQ9NV96 361 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 RCOR1Q9UKL0 485 aa21.01■□□□□ 0.95
COL9A3-210ENST00000472880 SLC9A3R1O14745 358 aaPredicted RBP21■□□□□ 0.95
COL9A3-210ENST00000472880 KLRC4O43908 158 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 RTN3O95197 1032 aaPredicted RBP21■□□□□ 0.95
COL9A3-210ENST00000472880 EPN2O95208 641 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 OLFM2O95897 454 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 OAS1P00973 400 aaKnown RBP21■□□□□ 0.95
COL9A3-210ENST00000472880 YWHAQP27348 245 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 RAP1GAPP47736 663 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 STK4Q13043 487 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 KMT5BQ4FZB7 885 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 AASDHQ4L235 1098 aaPredicted RBP21■□□□□ 0.95
COL9A3-210ENST00000472880 FILIP1Q7Z7B0 1213 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 FAM35AQ86V20 835 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 DDX42Q86XP3 938 aaKnown RBP eCLIP21■□□□□ 0.95
COL9A3-210ENST00000472880 NUP93Q8N1F7 819 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 KIAA1958Q8N8K9 716 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 C12orf50Q8NA57 414 aaPredicted RBP21■□□□□ 0.95
COL9A3-210ENST00000472880 FBXO32Q969P5 355 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 TNIP3Q96KP6 325 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 RNF38Q9H0F5 515 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 ATG2BQ96BY7 2078 aa21■□□□□ 0.95
COL9A3-210ENST00000472880 CYP17A1P05093 508 aa20.99■□□□□ 0.95
COL9A3-210ENST00000472880 MBL2P11226 248 aaPredicted RBP20.99■□□□□ 0.95
COL9A3-210ENST00000472880 P4HA1P13674 534 aa20.99■□□□□ 0.95
COL9A3-210ENST00000472880 OPRD1P41143 372 aa20.99■□□□□ 0.95
COL9A3-210ENST00000472880 CDH8P55286 799 aa20.99■□□□□ 0.95
COL9A3-210ENST00000472880 CLDN10P78369 228 aa20.99■□□□□ 0.95
COL9A3-210ENST00000472880 SLC9A9Q8IVB4 645 aa20.99■□□□□ 0.95
COL9A3-210ENST00000472880 OVCA2Q8WZ82 227 aa20.99■□□□□ 0.95
COL9A3-210ENST00000472880 DMAP1Q9NPF5 467 aaPredicted RBP20.99■□□□□ 0.95
COL9A3-210ENST00000472880 CFAP97Q9P2B7 532 aa20.99■□□□□ 0.95
COL9A3-210ENST00000472880 EML5Q05BV3 1969 aa20.98■□□□□ 0.95
COL9A3-210ENST00000472880 GDF9O60383 454 aa20.98■□□□□ 0.95
COL9A3-210ENST00000472880 PFKFB1P16118 471 aa20.98■□□□□ 0.95
COL9A3-210ENST00000472880 SEC13P55735 322 aa20.98■□□□□ 0.95
COL9A3-210ENST00000472880 CCDC6Q16204 474 aa20.98■□□□□ 0.95
COL9A3-210ENST00000472880 TSTD1Q8NFU3 115 aa20.98■□□□□ 0.95
COL9A3-210ENST00000472880 SMARCD1Q96GM5 515 aa20.98■□□□□ 0.95
COL9A3-210ENST00000472880 DMAC2Q9NW81 257 aa20.98■□□□□ 0.95
COL9A3-210ENST00000472880 USP25Q9UHP3 1055 aa20.98■□□□□ 0.95
COL9A3-210ENST00000472880 A0A1B0GVL5 298 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 PDXKO00764 312 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 SCAMP3O14828 347 aaKnown RBP20.97■□□□□ 0.95
COL9A3-210ENST00000472880 VNN1O95497 513 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 C4BPAP04003 597 aaKnown RBP20.97■□□□□ 0.95
COL9A3-210ENST00000472880 NR3C1P04150 777 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 DHCR24Q15392 516 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 SF3A2Q15428 464 aaKnown RBP20.97■□□□□ 0.95
COL9A3-210ENST00000472880 ELF2Q15723 593 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 USP33Q8TEY7 942 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 ELMO3Q96BJ8 720 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 ZC3H10Q96K80 434 aaKnown RBP20.97■□□□□ 0.95
COL9A3-210ENST00000472880 KCNK16Q96T55 309 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 KCTD10Q9H3F6 313 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 KRT82Q9NSB4 513 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 EBF1Q9UH73 591 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 PCDHGA5Q9Y5G8 931 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 NCOR2Q9Y618 2525 aa20.97■□□□□ 0.95
COL9A3-210ENST00000472880 SPAG17Q6Q759 2223 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 ADH1CP00326 375 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 MYL1P05976 194 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 ZNF806P0C7X5 589 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 CMA1P23946 247 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 MPLP40238 635 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 DGKEP52429 567 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 SLC5A3P53794 718 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 DLG4P78352 724 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 SGSM1Q2NKQ1 1148 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 GAB4Q2WGN9 574 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 PLK5Q496M5 336 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 C2orf27AQ580R0 203 aa20.96■□□□□ 0.95
COL9A3-210ENST00000472880 PPM1JQ5JR12 505 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms