RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 RDH13Q8NBN7 331 aa10.05□□□□□ -0.8
HDAC3-205ENST00000469550 NSUN6Q8TEA1 469 aaKnown RBP10.05□□□□□ -0.8
HDAC3-205ENST00000469550 SPOCK2Q92563 424 aa10.05□□□□□ -0.8
HDAC3-205ENST00000469550 COPS5Q92905 334 aa10.05□□□□□ -0.8
HDAC3-205ENST00000469550 KAT5Q92993 513 aa10.05□□□□□ -0.8
HDAC3-205ENST00000469550 PWWP2AQ96N64 755 aa10.05□□□□□ -0.8
HDAC3-205ENST00000469550 HERPUD2Q9BSE4 406 aa10.05□□□□□ -0.8
HDAC3-205ENST00000469550 CADM1Q9BY67 442 aaKnown RBP10.05□□□□□ -0.8
HDAC3-205ENST00000469550 TMEM117Q9H0C3 514 aa10.05□□□□□ -0.8
HDAC3-205ENST00000469550 PDP2Q9P2J9 529 aa10.05□□□□□ -0.8
HDAC3-205ENST00000469550 ANKFY1Q9P2R3 1169 aa10.05□□□□□ -0.8
HDAC3-205ENST00000469550 STX18Q9P2W9 335 aaKnown RBP10.05□□□□□ -0.8
HDAC3-205ENST00000469550 ZNF212Q9UDV6 495 aa10.05□□□□□ -0.8
HDAC3-205ENST00000469550 GRID1Q9ULK0 1009 aa10.05□□□□□ -0.8
HDAC3-205ENST00000469550 R3HDM2Q9Y2K5 976 aaKnown RBP10.05□□□□□ -0.8
HDAC3-205ENST00000469550 COL4A4P53420 1690 aaPredicted RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 MYO9BQ13459 2157 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 A8MXQ7 604 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 H0Y3Z8 333 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 ALOX15BO15296 676 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 GSC2O15499 205 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 PSTPIP1O43586 416 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 PARNO95453 639 aaKnown RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 MMP3P08254 477 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 CA4P22748 312 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 RPA3P35244 121 aaPredicted RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 MRPS5P82675 430 aaKnown RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 AP1B1Q10567 949 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 DYNC1I2Q13409 638 aaKnown RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 KPNB1Q14974 876 aaKnown RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 KRT72Q14CN4 511 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 SLC1A5Q15758 541 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 USH1GQ495M9 461 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 FAM47CQ5HY64 1035 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 PPP1R15BQ5SWA1 713 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 HHATQ5VTY9 493 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 FAM91A1Q658Y4 838 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 DRICH1Q6PGQ1 229 aaPredicted RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 ARHGAP18Q8N392 663 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 PPFIBP2Q8ND30 876 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 CYP2W1Q8TAV3 490 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 GATA6Q92908 595 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 PTCD3Q96EY7 689 aaKnown RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 NSL1Q96IY1 281 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 ACCSQ96QU6 501 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 NR1H4Q96RI1 486 aaPredicted RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 MIPEPQ99797 713 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 ST6GALNAC4Q9H4F1 302 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 SYNCQ9H7C4 482 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 MAP3K20Q9NYL2 800 aaKnown RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 COL20A1Q9P218 1284 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 LARSQ9P2J5 1176 aaKnown RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 ANAPC7Q9UJX3 599 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 MRPL11Q9Y3B7 192 aaKnown RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 TTC28Q96AY4 2481 aa10.04□□□□□ -0.8
HDAC3-205ENST00000469550 TRIP12Q14669 1992 aaPredicted RBP10.04□□□□□ -0.8
HDAC3-205ENST00000469550 NFASCO94856 1347 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 FAM170AA1A519 330 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 ZBBXA8MT70 800 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 DNALI1O14645 258 aaPredicted RBP10.03□□□□□ -0.8
HDAC3-205ENST00000469550 TGDSO95455 350 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 UNGP13051 313 aaPredicted RBP10.03□□□□□ -0.8
HDAC3-205ENST00000469550 HOXD8P13378 290 aaPredicted RBP10.03□□□□□ -0.8
HDAC3-205ENST00000469550 KRT15P19012 456 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 RFC5P40937 340 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 GPC3P51654 580 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 HSD17B4P51659 736 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 ADCY1Q08828 1119 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 STXBP2Q15833 593 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 LRRC74BQ6ZQY2 392 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 MTDHQ86UE4 582 aaKnown RBP10.03□□□□□ -0.8
HDAC3-205ENST00000469550 RHOT1Q8IXI2 618 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 KATNAL2Q8IYT4 538 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 DAW1Q8N136 415 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 TET1Q8NFU7 2136 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 HELQQ8TDG4 1101 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 AFG1LQ8WV93 481 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 SCG3Q8WXD2 468 aaKnown RBP10.03□□□□□ -0.8
HDAC3-205ENST00000469550 DTNBP1Q96EV8 351 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 TAAR1Q96RJ0 339 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 TRIM4Q9C037 500 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 PHACTR1Q9C0D0 580 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 VPS11Q9H270 941 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 SAYSD1Q9NPB0 183 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 DDX43Q9NXZ2 648 aaKnown RBP10.03□□□□□ -0.8
HDAC3-205ENST00000469550 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.03□□□□□ -0.8
HDAC3-205ENST00000469550 CDH23Q9H251 3354 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 ARHGEF35A5YM69 484 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 TM9SF1O15321 606 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 ATP9AO75110 1047 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 PROSCO94903 275 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 UPP2O95045 317 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 TJP3O95049 919 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 PSMG1O95456 288 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 IL1BP01584 269 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 RALAP11233 206 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 MYOGP15173 224 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 IGFBP4P22692 258 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 RCN2Q14257 317 aa10.03□□□□□ -0.8
HDAC3-205ENST00000469550 RCN1Q15293 331 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms