RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 RFPL2O75678 378 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 FGF19O95750 216 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 GZMAP12544 262 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 SKILP12757 684 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 HMGA1P17096 107 aaKnown RBP16.02■□□□□ 0.16
NPHP4-205ENST00000466897 TNFAIP3P21580 790 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 CDR1P51861 262 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 KIF11P52732 1056 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 SLC5A3P53794 718 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 GOLGA8FQ08AF8 430 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 GOLGA8DPQ0D2H9 430 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 CLEC16AQ2KHT3 1053 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 ASTE1Q2TB18 679 aaPredicted RBP16.02■□□□□ 0.16
NPHP4-205ENST00000466897 PMF1Q6P1K2 205 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 TMEM110Q86TL2 294 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 PASD1Q8IV76 773 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 MICALL1Q8N3F8 863 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 OVCA2Q8WZ82 227 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 ZNF512Q96ME7 567 aaPredicted RBP16.02■□□□□ 0.16
NPHP4-205ENST00000466897 MIS12Q9H081 205 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 ADAM7Q9H2U9 754 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 UXTQ9UBK9 157 aaPredicted RBP16.02■□□□□ 0.16
NPHP4-205ENST00000466897 CYTH4Q9UIA0 394 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 USP3Q9Y6I4 520 aa16.02■□□□□ 0.16
NPHP4-205ENST00000466897 BRWD1Q9NSI6 2320 aa16.02■□□□□ 0.15
NPHP4-205ENST00000466897 EYSQ5T1H1 3165 aa16.01■□□□□ 0.15
NPHP4-205ENST00000466897 NUP210Q8TEM1 1887 aaPredicted RBP16.01■□□□□ 0.15
NPHP4-205ENST00000466897 SPDYE4A6NLX3 237 aa16.01■□□□□ 0.15
NPHP4-205ENST00000466897 TULP2O00295 520 aa16.01■□□□□ 0.15
NPHP4-205ENST00000466897 DDX3XO00571 662 aaKnown RBP eCLIP16.01■□□□□ 0.15
NPHP4-205ENST00000466897 PPP3CCP48454 512 aa16.01■□□□□ 0.15
NPHP4-205ENST00000466897 DNAJB7Q7Z6W7 309 aaPredicted RBP16.01■□□□□ 0.15
NPHP4-205ENST00000466897 GPR149Q86SP6 731 aa16.01■□□□□ 0.15
NPHP4-205ENST00000466897 PHF13Q86YI8 300 aaPredicted RBP16.01■□□□□ 0.15
NPHP4-205ENST00000466897 GPIHBP1Q8IV16 184 aa16.01■□□□□ 0.15
NPHP4-205ENST00000466897 SMRP1Q8NCR6 262 aa16.01■□□□□ 0.15
NPHP4-205ENST00000466897 MSANTD4Q8NCY6 345 aa16.01■□□□□ 0.15
NPHP4-205ENST00000466897 C1orf131Q8NDD1 294 aaKnown RBP16.01■□□□□ 0.15
NPHP4-205ENST00000466897 PCDHB18PQ96TA0 734 aa16.01■□□□□ 0.15
NPHP4-205ENST00000466897 LRRC3Q9BY71 257 aa16.01■□□□□ 0.15
NPHP4-205ENST00000466897 S1PR5Q9H228 398 aa16.01■□□□□ 0.15
NPHP4-205ENST00000466897 CNGB3Q9NQW8 809 aa16.01■□□□□ 0.15
NPHP4-205ENST00000466897 HELZP42694 1942 aaKnown RBP16.01■□□□□ 0.15
NPHP4-205ENST00000466897 CCL16O15467 120 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 FBXO21O94952 628 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 PLEKP08567 350 aaPredicted RBP16■□□□□ 0.15
NPHP4-205ENST00000466897 PTPN2P17706 415 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 MMP8P22894 467 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 YWHAQP27348 245 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 SSTR3P32745 418 aaPredicted RBP16■□□□□ 0.15
NPHP4-205ENST00000466897 NSFP46459 744 aaKnown RBP16■□□□□ 0.15
NPHP4-205ENST00000466897 GABRB2P47870 512 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 GSCP56915 257 aaPredicted RBP16■□□□□ 0.15
NPHP4-205ENST00000466897 DLX2Q07687 328 aaPredicted RBP16■□□□□ 0.15
NPHP4-205ENST00000466897 SLC18A3Q16572 532 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 PTPN20Q4JDL3 420 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 SDHAF4Q5VUM1 108 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 NAA35Q5VZE5 725 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 PM20D1Q6GTS8 502 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 GPRIN1Q7Z2K8 1008 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 CCDC186Q7Z3E2 898 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 TMC8Q8IU68 726 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 ZDHHC17Q8IUH5 632 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 TMTC1Q8IUR5 882 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 CCDC170Q8IYT3 715 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 PDZD8Q8NEN9 1154 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 IPO4Q8TEX9 1081 aaKnown RBP16■□□□□ 0.15
NPHP4-205ENST00000466897 GIPC2Q8TF65 315 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 SMG7Q92540 1137 aaKnown RBP16■□□□□ 0.15
NPHP4-205ENST00000466897 PPP1R13BQ96KQ4 1090 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 CPXM1Q96SM3 734 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 CHP1Q99653 195 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 UBE2ZQ9H832 354 aaPredicted RBP16■□□□□ 0.15
NPHP4-205ENST00000466897 NHEJ1Q9H9Q4 299 aaPredicted RBP16■□□□□ 0.15
NPHP4-205ENST00000466897 LRRC4Q9HBW1 653 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 ASAH2Q9NR71 780 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 ADAMTS1Q9UHI8 967 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 NENFQ9UMX5 172 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 COG5Q9UP83 839 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 SCML2Q9UQR0 700 aa16■□□□□ 0.15
NPHP4-205ENST00000466897 SART1O43290 800 aaKnown RBP15.99■□□□□ 0.15
NPHP4-205ENST00000466897 GABBR2O75899 941 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 SCNN1AP37088 669 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 EIF4A3P38919 411 aaKnown RBP15.99■□□□□ 0.15
NPHP4-205ENST00000466897 TKTL1P51854 596 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 TAF12Q16514 161 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 RARS2Q5T160 578 aaKnown RBP15.99■□□□□ 0.15
NPHP4-205ENST00000466897 SNX30Q5VWJ9 437 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 ACAD10Q6JQN1 1059 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 CES5AQ6NT32 575 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 TMC5Q6UXY8 1006 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 ERICH1Q86X53 443 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 TMEM139Q8IV31 216 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 SIX6OS1Q8N1H7 587 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 C12orf76Q8N812 135 aaPredicted RBP15.99■□□□□ 0.15
NPHP4-205ENST00000466897 CCDC112Q8NEF3 446 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 SCAMP5Q8TAC9 235 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 GPR152Q8TDT2 470 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 IRGQQ8WZA9 623 aa15.99■□□□□ 0.15
NPHP4-205ENST00000466897 VCPIP1Q96JH7 1222 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms