RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 USP33Q8TEY7 942 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 TCEAL3Q969E4 200 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 ELOVL4Q9GZR5 314 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 XYLT2Q9H1B5 865 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 MAGEF1Q9HAY2 307 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 EHD2Q9NZN4 543 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 NXF1Q9UBU9 619 aaKnown RBP17.15■□□□□ 0.34
COL7A1-204ENST00000462475 EBF1Q9UH73 591 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 KMT2BQ9UMN6 2715 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-204ENST00000462475 HELZP42694 1942 aaKnown RBP17.15■□□□□ 0.34
COL7A1-204ENST00000462475 SPAG17Q6Q759 2223 aa17.15■□□□□ 0.34
COL7A1-204ENST00000462475 RALGAPA1Q6GYQ0 2036 aa17.14■□□□□ 0.34
COL7A1-204ENST00000462475 KIAA1549LQ6ZVL6 1849 aa17.14■□□□□ 0.34
COL7A1-204ENST00000462475 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.14■□□□□ 0.33
COL7A1-204ENST00000462475 A8MXQ7 604 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 K7EQS6 105 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 STAU1O95793 577 aaKnown RBP17.14■□□□□ 0.33
COL7A1-204ENST00000462475 PPP3CCP48454 512 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 CASP4P49662 377 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 SNRPFP62306 86 aaKnown RBP17.14■□□□□ 0.33
COL7A1-204ENST00000462475 TRPC3Q13507 836 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 C2orf27AQ580R0 203 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 STPG1Q5TH74 334 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 SFTPA1Q8IWL2 248 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 B3GALNT2Q8NCR0 500 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 TSTD1Q8NFU3 115 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 PLEKHO2Q8TD55 490 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 B3GNT5Q9BYG0 378 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 BACH2Q9BYV9 841 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 TPSD1Q9BZJ3 242 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 SMYD3Q9H7B4 428 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 SLC39A2Q9NP94 309 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 CFAP97Q9P2B7 532 aa17.14■□□□□ 0.33
COL7A1-204ENST00000462475 TM4SF5O14894 197 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 FAM163BP0C2L3 166 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 DGKEP52429 567 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 MESP2Q0VG99 397 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 CUL4BQ13620 913 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 DHCR24Q15392 516 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 ELF2Q15723 593 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 TDRD10Q5VZ19 366 aaKnown RBP17.13■□□□□ 0.33
COL7A1-204ENST00000462475 C12orf56Q8IXR9 622 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 GRAMD1CQ8IYS0 662 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 DDX1Q92499 740 aaKnown RBP17.13■□□□□ 0.33
COL7A1-204ENST00000462475 ELMO3Q96BJ8 720 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 VPS45Q9NRW7 570 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 INVSQ9Y283 1065 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 MYO16Q9Y6X6 1858 aa17.13■□□□□ 0.33
COL7A1-204ENST00000462475 CNOT1A5YKK6 2376 aaKnown RBP17.13■□□□□ 0.33
COL7A1-204ENST00000462475 EXOC3O60645 756 aa17.12■□□□□ 0.33
COL7A1-204ENST00000462475 MBL2P11226 248 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-204ENST00000462475 ATICP31939 592 aa17.12■□□□□ 0.33
COL7A1-204ENST00000462475 AFMP43652 599 aa17.12■□□□□ 0.33
COL7A1-204ENST00000462475 SLC6A11P48066 632 aa17.12■□□□□ 0.33
COL7A1-204ENST00000462475 CDH8P55286 799 aa17.12■□□□□ 0.33
COL7A1-204ENST00000462475 CREB5Q02930 508 aa17.12■□□□□ 0.33
COL7A1-204ENST00000462475 KNOP1Q1ED39 458 aaKnown RBP17.12■□□□□ 0.33
COL7A1-204ENST00000462475 ANO7Q6IWH7 933 aa17.12■□□□□ 0.33
COL7A1-204ENST00000462475 C12orf40Q86WS4 652 aa17.12■□□□□ 0.33
COL7A1-204ENST00000462475 CCDC33Q8N5R6 958 aa17.12■□□□□ 0.33
COL7A1-204ENST00000462475 SYAP1Q96A49 352 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-204ENST00000462475 SLITRK1Q96PX8 696 aa17.12■□□□□ 0.33
COL7A1-204ENST00000462475 PVALEFA0A1B0GWK0 134 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 LRRIQ3A6PVS8 624 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-204ENST00000462475 PHACTR2O75167 634 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 KRT37O76014 449 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 RHOBTB1O94844 696 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 CHRM1P11229 460 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-204ENST00000462475 HNRNPLP14866 589 aaKnown RBP eCLIP17.11■□□□□ 0.33
COL7A1-204ENST00000462475 GBP1P32455 592 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 BIRC3Q13489 604 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 ZNF699Q32M78 642 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 RESP18Q5W5W9 173 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 SCARA5Q6ZMJ2 495 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 FAM35AQ86V20 835 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 RASSF3Q86WH2 238 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 ADGRG2Q8IZP9 1017 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 NUP93Q8N1F7 819 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 KIAA1958Q8N8K9 716 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 MDGA1Q8NFP4 955 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 CCDC26Q8TAB7 109 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 FBXO32Q969P5 355 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 ZFRQ96KR1 1074 aaKnown RBP17.11■□□□□ 0.33
COL7A1-204ENST00000462475 KCNK16Q96T55 309 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 SDCBP2Q9H190 292 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 VRTNQ9H8Y1 702 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 CGNQ9P2M7 1197 aaKnown RBP17.11■□□□□ 0.33
COL7A1-204ENST00000462475 MMP17Q9ULZ9 603 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 PCDHA7Q9UN72 937 aa17.11■□□□□ 0.33
COL7A1-204ENST00000462475 MAP1BP46821 2468 aaKnown RBP17.1■□□□□ 0.33
COL7A1-204ENST00000462475 BCLAF3A2AJT9 711 aaKnown RBP17.1■□□□□ 0.33
COL7A1-204ENST00000462475 SLC9A3R1O14745 358 aaPredicted RBP17.1■□□□□ 0.33
COL7A1-204ENST00000462475 COCHO43405 550 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 CLSTN1O94985 981 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 F13A1P00488 732 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 ZSCAN22P10073 491 aaPredicted RBP17.1■□□□□ 0.33
COL7A1-204ENST00000462475 BCKDHBP21953 392 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 YWHAQP27348 245 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 ME1P48163 572 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 N4BP2L1Q5TBK1 243 aaPredicted RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms