RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 TRIM49P0CI25 452 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 TRIM49CP0CI26 452 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 TAF10Q12962 218 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 TMEM196Q5HYL7 178 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 SV2AQ7L0J3 742 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 KIAA2013Q8IYS2 634 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 NUP93Q8N1F7 819 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 CCDC150Q8NCX0 1101 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 PDZD8Q8NEN9 1154 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 FBXO32Q969P5 355 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 ELMO3Q96BJ8 720 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 SDCBP2Q9H190 292 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 ECT2Q9H8V3 914 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 TMEM30AQ9NV96 361 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 GMEB2Q9UKD1 530 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 ZNF840PA6NDX5 716 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 OTOL1A6NHN0 477 aaPredicted RBP14.81□□□□□ -0.04
USP4-206ENST00000461553 TRDMT1O14717 391 aaKnown RBP14.81□□□□□ -0.04
USP4-206ENST00000461553 AKAP3O75969 853 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 ASS1P00966 412 aaKnown RBP14.81□□□□□ -0.04
USP4-206ENST00000461553 OAS1P00973 400 aaKnown RBP14.81□□□□□ -0.04
USP4-206ENST00000461553 YWHAQP27348 245 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 GJA4P35212 333 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 PSMC2P35998 433 aaKnown RBP14.81□□□□□ -0.04
USP4-206ENST00000461553 ASPAP45381 313 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 SLC5A3P53794 718 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 NUCB2P80303 420 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 ENPEPQ07075 957 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 NR1H3Q13133 447 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 EML3Q32P44 896 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 SPOPLQ6IQ16 392 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 FSTL4Q6MZW2 842 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 ACOT1Q86TX2 421 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 OVCA2Q8WZ82 227 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 P2RY13Q9BPV8 354 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 MMRN2Q9H8L6 949 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 RMND1Q9NWS8 449 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 HMGXB4Q9UGU5 601 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 CACNA1AO00555 2505 aa14.81□□□□□ -0.04
USP4-206ENST00000461553 K7ESF4 209 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 LEFTY2O00292 366 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 ATG13O75143 517 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 AP1G2O75843 785 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 OLFM2O95897 454 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 EPB41P11171 864 aaKnown RBP14.8□□□□□ -0.04
USP4-206ENST00000461553 MBL2P11226 248 aaPredicted RBP14.8□□□□□ -0.04
USP4-206ENST00000461553 CCDC130P13994 396 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 DRD1P21728 446 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 ID4P47928 161 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 GCLMP48507 274 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 NDST1P52848 882 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 SLC7A9P82251 487 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 ORC1Q13415 861 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 ADAM9Q13443 819 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 PNOCQ13519 176 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 EDRF1Q3B7T1 1238 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 ZCWPW2Q504Y3 356 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 C1orf220Q5T0J3 134 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 PRR23BQ6ZRT6 265 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 UNC93AQ86WB7 457 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 DDX42Q86XP3 938 aaKnown RBP eCLIP14.8□□□□□ -0.04
USP4-206ENST00000461553 SMYD4Q8IYR2 804 aaPredicted RBP14.8□□□□□ -0.04
USP4-206ENST00000461553 DCLK2Q8N568 766 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 CD101Q93033 1021 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 CHFRQ96EP1 664 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 DNAI2Q9GZS0 605 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 NIF3L1Q9GZT8 377 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 CPQQ9Y646 472 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 DNAH14Q0VDD8 3507 aa14.8□□□□□ -0.04
USP4-206ENST00000461553 CHURC1-FNTBB4DL54 471 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 RNF40O75150 1001 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 EGFP01133 1207 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 CNR2P34972 360 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 FNTBP49356 437 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 MXI1P50539 228 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 FBXO43Q4G163 708 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 HEATR6Q6AI08 1181 aaKnown RBP14.79□□□□□ -0.04
USP4-206ENST00000461553 SDK1Q7Z5N4 2213 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 LONP2Q86WA8 852 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 FUKQ8N0W3 1084 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 GPR161Q8N6U8 529 aaKnown RBP14.79□□□□□ -0.04
USP4-206ENST00000461553 KIAA1958Q8N8K9 716 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 SLC2A14Q8TDB8 520 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 MYO18AQ92614 2054 aaKnown RBP14.79□□□□□ -0.04
USP4-206ENST00000461553 KCNK16Q96T55 309 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 TSG101Q99816 390 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 TMEM8AQ9HCN3 771 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.79□□□□□ -0.04
USP4-206ENST00000461553 FAM49BQ9NUQ9 324 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 SMPD4Q9NXE4 827 aa14.79□□□□□ -0.04
USP4-206ENST00000461553 SLC9A3R1O14745 358 aaPredicted RBP14.78□□□□□ -0.04
USP4-206ENST00000461553 SMC2O95347 1197 aa14.78□□□□□ -0.04
USP4-206ENST00000461553 FAM200BP0CF97 657 aa14.78□□□□□ -0.04
USP4-206ENST00000461553 TUBP50607 506 aa14.78□□□□□ -0.04
USP4-206ENST00000461553 PPP3CAQ08209 521 aa14.78□□□□□ -0.04
USP4-206ENST00000461553 DMWDQ09019 674 aa14.78□□□□□ -0.04
USP4-206ENST00000461553 INCA1Q0VD86 236 aa14.78□□□□□ -0.04
USP4-206ENST00000461553 SIM2Q14190 667 aaPredicted RBP14.78□□□□□ -0.04
USP4-206ENST00000461553 LPAL2Q16609 132 aa14.78□□□□□ -0.04
USP4-206ENST00000461553 LAIR1Q6GTX8 287 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms