RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 SEMA4DQ92854 862 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 CEP63Q96MT8 703 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 METTL14Q9HCE5 456 aaKnown RBP17.1■□□□□ 0.33
COL7A1-203ENST00000459756 COMMD8Q9NX08 183 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 FBXO4Q9UKT5 387 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 ARHGAP26Q9UNA1 814 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 ZFHX2Q9C0A1 2572 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-203ENST00000459756 TNFRSF10BO14763 440 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 SP9P0CG40 484 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 TCF3P15923 654 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 CD58P19256 250 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 USP4Q13107 963 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 RUNX3Q13761 415 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 LRRC32Q14392 662 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 MTF1Q14872 753 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 ZNF528Q3MIS6 628 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 MAML2Q8IZL2 1156 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-203ENST00000459756 C12orf29Q8N999 325 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 TTC8Q8TAM2 541 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 RIN3Q8TB24 985 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 TWNKQ96RR1 684 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 HNRNPABQ99729 332 aaKnown RBP17.09■□□□□ 0.33
COL7A1-203ENST00000459756 CHRDQ9H2X0 955 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 FAM124BQ9H5Z6 455 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-203ENST00000459756 LMAN1LQ9HAT1 526 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 CSNK1G1Q9HCP0 422 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 FAM49BQ9NUQ9 324 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 COQ4Q9Y3A0 265 aa17.09■□□□□ 0.33
COL7A1-203ENST00000459756 HELZP42694 1942 aaKnown RBP17.09■□□□□ 0.33
COL7A1-203ENST00000459756 DMDP11532 3685 aa17.08■□□□□ 0.33
COL7A1-203ENST00000459756 BICDL2A1A5D9 508 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 PPP1R3GB7ZBB8 358 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 CILPO75339 1184 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 ABL1P00519 1130 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 FAM200BP0CF97 657 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 CHRNB1P11230 501 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 BMP6P22004 513 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 SLC5A3P53794 718 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 SLC7A9P82251 487 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 AMPD2Q01433 879 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 IFRD2Q12894 506 aaPredicted RBP17.08■□□□□ 0.32
COL7A1-203ENST00000459756 MTAPQ13126 283 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 CBWD6Q4V339 395 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 CBWD3Q5JTY5 395 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 CBWD5Q5RIA9 395 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 ZC3H14Q6PJT7 736 aaKnown RBP17.08■□□□□ 0.32
COL7A1-203ENST00000459756 TXNDC11Q6PKC3 985 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 MAMSTRQ6ZN01 415 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 FILIP1Q7Z7B0 1213 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 SH3RF2Q8TEC5 729 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 WHAMMQ8TF30 809 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 OSCP1Q8WVF1 389 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 NELFBQ8WX92 580 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 NKD2Q969F2 451 aaPredicted RBP17.08■□□□□ 0.32
COL7A1-203ENST00000459756 FBXO32Q969P5 355 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 SLC35C1Q96A29 364 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 CYFIP2Q96F07 1278 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 SMOQ99835 787 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 SEMA4AQ9H3S1 761 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 EBF3Q9H4W6 596 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 HPS4Q9NQG7 708 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 IL37Q9NZH6 218 aa17.08■□□□□ 0.32
COL7A1-203ENST00000459756 FAM92AA1XBS5 289 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 BIN1O00499 593 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 GFRA3O60609 400 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 OLFM2O95897 454 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 OAS1P00973 400 aaKnown RBP17.07■□□□□ 0.32
COL7A1-203ENST00000459756 IFNAR2P48551 515 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 MAP3K7CLP57077 242 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 DGKKQ5KSL6 1271 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 SNX30Q5VWJ9 437 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 TRIM68Q6AZZ1 485 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 KLHL10Q6JEL2 608 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 TTI2Q6NXR4 508 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 CPA6Q8N4T0 437 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 KIAA1958Q8N8K9 716 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 TRIML1Q8N9V2 468 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 TTC16Q8NEE8 873 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 ZMIZ2Q8NF64 920 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 SCAMP5Q8TAC9 235 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 ATP2A3Q93084 1043 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 DUSP9Q99956 384 aaKnown RBP17.07■□□□□ 0.32
COL7A1-203ENST00000459756 FBXO44Q9H4M3 255 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 DUS2Q9NX74 493 aaKnown RBP17.07■□□□□ 0.32
COL7A1-203ENST00000459756 MYH10P35580 1976 aa17.07■□□□□ 0.32
COL7A1-203ENST00000459756 BEST1O76090 585 aa17.06■□□□□ 0.32
COL7A1-203ENST00000459756 ARSAP15289 507 aa17.06■□□□□ 0.32
COL7A1-203ENST00000459756 ADORA2BP29275 332 aa17.06■□□□□ 0.32
COL7A1-203ENST00000459756 TUBP50607 506 aa17.06■□□□□ 0.32
COL7A1-203ENST00000459756 PPP2R5DQ14738 602 aa17.06■□□□□ 0.32
COL7A1-203ENST00000459756 PON2Q15165 354 aa17.06■□□□□ 0.32
COL7A1-203ENST00000459756 CCDC40Q4G0X9 1142 aa17.06■□□□□ 0.32
COL7A1-203ENST00000459756 SYNPOQ8N3V7 929 aa17.06■□□□□ 0.32
COL7A1-203ENST00000459756 RNF38Q9H0F5 515 aa17.06■□□□□ 0.32
COL7A1-203ENST00000459756 PRMT8Q9NR22 394 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-203ENST00000459756 CISHQ9NSE2 258 aa17.06■□□□□ 0.32
COL7A1-203ENST00000459756 CTNND2Q9UQB3 1225 aa17.06■□□□□ 0.32
COL7A1-203ENST00000459756 PRR23AA6NEV1 266 aa17.05■□□□□ 0.32
COL7A1-203ENST00000459756 OTOL1A6NHN0 477 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-203ENST00000459756 LEFTY2O00292 366 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms