RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 YWHAQP27348 245 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 PPP1R2P41236 205 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 MXI1P50539 228 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 PMS1P54277 932 aaKnown RBP22.52■■□□□ 1.2
HMGB3-205ENST00000455596 PON2Q15165 354 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 DGKKQ5KSL6 1271 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 ISM2Q6H9L7 571 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 ZC3H3Q8IXZ2 948 aaKnown RBP22.52■■□□□ 1.2
HMGB3-205ENST00000455596 FBXL13Q8NEE6 735 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 PDZD8Q8NEN9 1154 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 PRMT8Q9NR22 394 aaPredicted RBP22.52■■□□□ 1.2
HMGB3-205ENST00000455596 MAN1B1Q9UKM7 699 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 ARHGAP26Q9UNA1 814 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 TRIM49BA6NDI0 452 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 PSMA7O14818 248 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 GADD45BO75293 160 aaPredicted RBP22.51■■□□□ 1.19
HMGB3-205ENST00000455596 ARSAP15289 507 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 DCAF17Q5H9S7 520 aaPredicted RBP22.51■■□□□ 1.19
HMGB3-205ENST00000455596 TCERG1LQ5VWI1 586 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 MAMSTRQ6ZN01 415 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 SLC2A14Q8TDB8 520 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 SH3RF2Q8TEC5 729 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 OSCP1Q8WVF1 389 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 OVCA2Q8WZ82 227 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 FBXO32Q969P5 355 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 DHTKD1Q96HY7 919 aaPredicted RBP22.51■■□□□ 1.19
HMGB3-205ENST00000455596 NT5C1AQ9BXI3 368 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 DNAI2Q9GZS0 605 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 FAM49BQ9NUQ9 324 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 RAB20Q9NX57 234 aa22.51■■□□□ 1.19
HMGB3-205ENST00000455596 DUS2Q9NX74 493 aaKnown RBP22.51■■□□□ 1.19
HMGB3-205ENST00000455596 IFNAR2P48551 515 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 CCR3P51677 355 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 SLC5A3P53794 718 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 AMPD2Q01433 879 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 PPP2R5DQ14738 602 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 CPA6Q8N4T0 437 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 C12orf29Q8N999 325 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 SEMA4DQ92854 862 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 FAXDC2Q96IV6 333 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 TWNKQ96RR1 684 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 SMOQ99835 787 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 CSNK1G1Q9HCP0 422 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 RBM12Q9NTZ6 932 aaKnown RBP22.5■■□□□ 1.19
HMGB3-205ENST00000455596 COMMD8Q9NX08 183 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 KIAA1549LQ6ZVL6 1849 aa22.5■■□□□ 1.19
HMGB3-205ENST00000455596 OTOL1A6NHN0 477 aaPredicted RBP22.49■■□□□ 1.19
HMGB3-205ENST00000455596 TNFRSF10BO14763 440 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 CILPO75339 1184 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 OLFM2O95897 454 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 OAS1P00973 400 aaKnown RBP22.49■■□□□ 1.19
HMGB3-205ENST00000455596 CD58P19256 250 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 ADORA2BP29275 332 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 SLC7A9P82251 487 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 WDR44Q5JSH3 913 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 TSSK4Q6SA08 328 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 ZMIZ2Q8NF64 920 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 SCAMP5Q8TAC9 235 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 ATP2A3Q93084 1043 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 CYFIP2Q96F07 1278 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 RNF38Q9H0F5 515 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 WNT6Q9Y6F9 365 aa22.49■■□□□ 1.19
HMGB3-205ENST00000455596 ATG2BQ96BY7 2078 aa22.48■■□□□ 1.19
HMGB3-205ENST00000455596 LEFTY2O00292 366 aa22.48■■□□□ 1.19
HMGB3-205ENST00000455596 BEST1O76090 585 aa22.48■■□□□ 1.19
HMGB3-205ENST00000455596 LMNAP02545 664 aaKnown RBP22.48■■□□□ 1.19
HMGB3-205ENST00000455596 FAM200BP0CF97 657 aa22.48■■□□□ 1.19
HMGB3-205ENST00000455596 CD44P16070 742 aaKnown RBP22.48■■□□□ 1.19
HMGB3-205ENST00000455596 MAP3K7CLP57077 242 aa22.48■■□□□ 1.19
HMGB3-205ENST00000455596 CCINQ13939 588 aa22.48■■□□□ 1.19
HMGB3-205ENST00000455596 SYNPOQ8N3V7 929 aa22.48■■□□□ 1.19
HMGB3-205ENST00000455596 SPEM1Q8N4L4 309 aa22.48■■□□□ 1.19
HMGB3-205ENST00000455596 WHAMMQ8TF30 809 aa22.48■■□□□ 1.19
HMGB3-205ENST00000455596 HNRNPABQ99729 332 aaKnown RBP22.48■■□□□ 1.19
HMGB3-205ENST00000455596 ECT2Q9H8V3 914 aa22.48■■□□□ 1.19
HMGB3-205ENST00000455596 IL37Q9NZH6 218 aa22.48■■□□□ 1.19
HMGB3-205ENST00000455596 ARMCX3Q9UH62 379 aaPredicted RBP22.48■■□□□ 1.19
HMGB3-205ENST00000455596 PCDHGA2Q9Y5H1 932 aa22.48■■□□□ 1.19
HMGB3-205ENST00000455596 CXCL12P48061 93 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 ZXDBP98169 803 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 GAS6Q14393 721 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 EML3Q32P44 896 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 CBWD6Q4V339 395 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 CBWD3Q5JTY5 395 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 CBWD5Q5RIA9 395 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 TTC39CQ8N584 583 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 ATRIPQ8WXE1 791 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 NELL1Q92832 810 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 EXOC4Q96A65 974 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 CEP63Q96MT8 703 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 FAM126AQ9BYI3 521 aaPredicted RBP22.47■■□□□ 1.19
HMGB3-205ENST00000455596 FBXO44Q9H4M3 255 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 METTL14Q9HCE5 456 aaKnown RBP22.47■■□□□ 1.19
HMGB3-205ENST00000455596 ZSCAN32Q9NX65 697 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 CHMP5Q9NZZ3 219 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 CHORDC1Q9UHD1 332 aaPredicted RBP22.47■■□□□ 1.19
HMGB3-205ENST00000455596 CPQQ9Y646 472 aa22.47■■□□□ 1.19
HMGB3-205ENST00000455596 FAM92AA1XBS5 289 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 TRDMT1O14717 391 aaKnown RBP22.46■■□□□ 1.19
HMGB3-205ENST00000455596 MBL2P11226 248 aaPredicted RBP22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms