RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 GPR88Q9GZN0 384 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 SLITRK6Q9H5Y7 841 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 PLCB1Q9NQ66 1216 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 ITGA11Q9UKX5 1188 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 UBQLN1Q9UMX0 589 aaKnown RBP12.94□□□□□ -0.34
PTPRF-208ENST00000437607 FRYQ5TBA9 3013 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 ZFHX4Q86UP3 3567 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 CFAP47Q6ZTR5 3102 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 OR6C75A6NL08 312 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 CHURC1-FNTBB4DL54 471 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 K7ESF4 209 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 HRO43593 1189 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 NRDCO43847 1150 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 GYPCP04921 128 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 KRT19P08727 400 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 SDHBP21912 280 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 PON1P27169 355 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 DEKP35659 375 aaKnown RBP12.93□□□□□ -0.34
PTPRF-208ENST00000437607 CXCL12P48061 93 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 FNTBP49356 437 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 SRSF5Q13243 272 aaKnown RBP12.93□□□□□ -0.34
PTPRF-208ENST00000437607 NCOA4Q13772 614 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 FIGNQ5HY92 759 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 LAIR1Q6GTX8 287 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 TRAPPC11Q7Z392 1133 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 ARID3BQ8IVW6 561 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-208ENST00000437607 SPEM1Q8N4L4 309 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 CELF5Q8N6W0 485 aaKnown RBP12.93□□□□□ -0.34
PTPRF-208ENST00000437607 ATAD1Q8NBU5 361 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 ZNF397Q8NF99 534 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-208ENST00000437607 E2F7Q96AV8 911 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 ZFYVE19Q96K21 471 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 FAM84AQ96KN4 292 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 RTKNQ9BST9 563 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 OXCT2Q9BYC2 517 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-208ENST00000437607 RAB20Q9NX57 234 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 APEX2Q9UBZ4 518 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 GMEB2Q9UKD1 530 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 CDV3Q9UKY7 258 aaKnown RBP12.93□□□□□ -0.34
PTPRF-208ENST00000437607 COQ4Q9Y3A0 265 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.93□□□□□ -0.34
PTPRF-208ENST00000437607 MYOFQ9NZM1 2061 aa12.93□□□□□ -0.34
PTPRF-208ENST00000437607 A0A1W2PQJ5 194 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 MYBPHLA2RUH7 354 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 AKR1B15C9JRZ8 316 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-208ENST00000437607 SPECC1L-ADORA2AF8WAN1 911 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 MFAP3LO75121 409 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 PAPSS2O95340 614 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-208ENST00000437607 PRAMEF12O95522 483 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 C4BPAP04003 597 aaKnown RBP12.92□□□□□ -0.34
PTPRF-208ENST00000437607 ITGB3P05106 788 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 SLC9A1P19634 815 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 TYMPP19971 482 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 EPHB3P54753 998 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 LILRA4P59901 499 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 NOP14P78316 857 aaKnown RBP12.92□□□□□ -0.34
PTPRF-208ENST00000437607 KCNMA1Q12791 1236 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 PLD1Q13393 1074 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 PPP2R5DQ14738 602 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 ZNF699Q32M78 642 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 OVOS1Q6IE37 1185 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 DSTYKQ6XUX3 929 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 PRR23BQ6ZRT6 265 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 DNAJB7Q7Z6W7 309 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-208ENST00000437607 C1orf127Q8N9H9 656 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 OR10T2Q8NGX3 314 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 TTC8Q8TAM2 541 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 CSGALNACT1Q8TDX6 532 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 ZNF516Q92618 1163 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 PSMG2Q969U7 264 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 MSANTD3Q96H12 275 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 SENP8Q96LD8 212 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 ZNF560Q96MR9 790 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 SPAG5Q96R06 1193 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 GANQ9H2C0 597 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 GTSE1Q9NYZ3 720 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 THADAQ6YHU6 1953 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 CEP192Q8TEP8 1941 aa12.92□□□□□ -0.34
PTPRF-208ENST00000437607 PIRO00625 290 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 VNN1O95497 513 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 RETP07949 1114 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 UCHL3P15374 230 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 GABRR2P28476 465 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 POLR2BP30876 1174 aaKnown RBP12.91□□□□□ -0.34
PTPRF-208ENST00000437607 CASP14P31944 242 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 CTHP32929 405 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 CDR1P51861 262 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 POLR2FP61218 127 aaKnown RBP12.91□□□□□ -0.34
PTPRF-208ENST00000437607 LRMPQ12912 555 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 RAPGEF1Q13905 1077 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 CCINQ13939 588 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 SIM2Q14190 667 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-208ENST00000437607 KLHDC7AQ5VTJ3 777 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 C9orf57Q5W0N0 161 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 FMNL3Q8IVF7 1028 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 YAF2Q8IY57 180 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 PPM1KQ8N3J5 372 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 EHBP1Q8NDI1 1231 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 FAM81BQ96LP2 452 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 LPIN3Q9BQK8 851 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms