RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 NXF1Q9UBU9 619 aaKnown RBP11.8□□□□□ -0.52
USP4-205ENST00000431357 CYTH4Q9UIA0 394 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 LRRC42Q9Y546 428 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 CHADO15335 359 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 CCDC22O60826 627 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 ENDOD1O94919 500 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 INHBAP08476 426 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 FGFR1P11362 822 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 GMPSP49915 693 aaPredicted RBP11.8□□□□□ -0.52
USP4-205ENST00000431357 NEK3P51956 506 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 ARFIP2P53365 341 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 PTK7Q13308 1070 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 NOMO1Q15155 1222 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 ATF7IP2Q5U623 682 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 DARS2Q6PI48 645 aaKnown RBP11.8□□□□□ -0.52
USP4-205ENST00000431357 MTDHQ86UE4 582 aaKnown RBP11.8□□□□□ -0.52
USP4-205ENST00000431357 FAM71DQ8N9W8 422 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 KLHL23Q8NBE8 558 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 SPATA18Q8TC71 538 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 CPXM1Q96SM3 734 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 FZD8Q9H461 694 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 RPF1Q9H9Y2 349 aaKnown RBP11.8□□□□□ -0.52
USP4-205ENST00000431357 USP18Q9UMW8 372 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 POLIQ9UNA4 740 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 LCTP09848 1927 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 TCRBV7S3A2A0A539 114 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 WDR91A4D1P6 747 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 CFAP69A5D8W1 941 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 KLF11O14901 512 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 HAUS5O94927 633 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 CBX6O95503 412 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 ERBB2P04626 1255 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 CD48P09326 243 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 TPBGLP0DKB5 382 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 ATICP31939 592 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 ELK3P41970 407 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 PTPN11Q06124 597 aaPredicted RBP11.79□□□□□ -0.52
USP4-205ENST00000431357 FSTL1Q12841 308 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 TAF11Q15544 211 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 CTC1Q2NKJ3 1217 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 PLPPR4Q7Z2D5 763 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 RIOX2Q8IUF8 465 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 TRIM42Q8IWZ5 723 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 KLRG1Q96E93 195 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 NUDCD1Q96RS6 583 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 FAM124BQ9H5Z6 455 aaPredicted RBP11.79□□□□□ -0.52
USP4-205ENST00000431357 DCLRE1BQ9H816 532 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 C10orf88Q9H8K7 445 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 PAK5Q9P286 719 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 PCSK1NQ9UHG2 260 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 CHMP2BQ9UQN3 213 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 AFG3L2Q9Y4W6 797 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 TEX264Q9Y6I9 313 aa11.79□□□□□ -0.52
USP4-205ENST00000431357 LGR5O75473 907 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 MICAL2O94851 1124 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 HMGCRP04035 888 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 KRT19P08727 400 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 GSTA2P09210 222 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 SETSIPP0DME0 302 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 VDRP11473 427 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 P4HA1P13674 534 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 EPHB2P29323 1055 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 ETV4P43268 484 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 ZNF143P52747 638 aaPredicted RBP11.78□□□□□ -0.52
USP4-205ENST00000431357 KCNJ11Q14654 390 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 KRT72Q14CN4 511 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 PRKD1Q15139 912 aaPredicted RBP11.78□□□□□ -0.52
USP4-205ENST00000431357 PLEKHG4Q58EX7 1191 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 LGSNQ5TDP6 509 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 TTC39BQ5VTQ0 682 aaPredicted RBP11.78□□□□□ -0.52
USP4-205ENST00000431357 LBX2Q6XYB7 198 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 MAP7D3Q8IWC1 876 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 EMC1Q8N766 993 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 RFWD2Q8NHY2 731 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 HSPH1Q92598 858 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 TMEM176AQ96HP8 235 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 NAF1Q96HR8 494 aaKnown RBP11.78□□□□□ -0.52
USP4-205ENST00000431357 NSL1Q96IY1 281 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 MPHOSPH6Q99547 160 aaKnown RBP11.78□□□□□ -0.52
USP4-205ENST00000431357 ADPGKQ9BRR6 497 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 CNPY3Q9BT09 278 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 CALN1Q9BXU9 219 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 ADAM33Q9BZ11 813 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 VRTNQ9H8Y1 702 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 CPSF2Q9P2I0 782 aaKnown RBP11.78□□□□□ -0.52
USP4-205ENST00000431357 KANSL3Q9P2N6 904 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 SLC17A7Q9P2U7 560 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 TJP2Q9UDY2 1190 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 TNFSF13BQ9Y275 285 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 TCRBV9S1A1TA0A576 114 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 TRDMT1O14717 391 aaKnown RBP11.78□□□□□ -0.52
USP4-205ENST00000431357 CILPO75339 1184 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 GPD1P21695 349 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 RXRBP28702 533 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 YWHAGP61981 247 aaKnown RBP eCLIP11.78□□□□□ -0.52
USP4-205ENST00000431357 CDK16Q00536 496 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 TNFAIP2Q03169 654 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 PDK2Q15119 407 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 TMEM132AQ24JP5 1023 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 DALRD3Q5D0E6 543 aaKnown RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms