RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 CREB5Q02930 508 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 TAF10Q12962 218 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 ZNF699Q32M78 642 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 C2orf27AQ580R0 203 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 SYT13Q7L8C5 426 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 LIMS2Q7Z4I7 341 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 B3GALNT2Q8NCR0 500 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 FBXO32Q969P5 355 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 SYAP1Q96A49 352 aaPredicted RBP15.45■□□□□ 0.06
SDC1-204ENST00000429035 ELMO3Q96BJ8 720 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 LOXL4Q96JB6 756 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 TTLL2Q9BWV7 592 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 BACH2Q9BYV9 841 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 RXFP3Q9NSD7 469 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 CFAP97Q9P2B7 532 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 CACNA1BQ00975 2339 aa15.45■□□□□ 0.06
SDC1-204ENST00000429035 CNOT1A5YKK6 2376 aaKnown RBP15.44■□□□□ 0.06
SDC1-204ENST00000429035 ATP8B3O60423 1300 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 ABCA7Q8IZY2 2146 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 ZNF840PA6NDX5 716 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 AKAP3O75969 853 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 CYP17A1P05093 508 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 TCF3P15923 654 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 OPRD1P41143 372 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 ZXDBP98169 803 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 KDSRQ06136 332 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 CUL4BQ13620 913 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 PLK5Q496M5 336 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 TCEAL6Q6IPX3 200 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 ANO7Q6IWH7 933 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 CEP57L1Q8IYX8 460 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 CCDC33Q8N5R6 958 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 TCEAL3Q969E4 200 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 C8orf48Q96LL4 319 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 CEP295NLQ96MC4 621 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 EXOC1Q9NV70 894 aa15.44■□□□□ 0.06
SDC1-204ENST00000429035 RHOBTB1O94844 696 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 F13A1P00488 732 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 ZNF806P0C7X5 589 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 PFKLP17858 780 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 YWHAQP27348 245 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 CDH8P55286 799 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 NOP14P78316 857 aaKnown RBP15.43■□□□□ 0.06
SDC1-204ENST00000429035 KNOP1Q1ED39 458 aaKnown RBP15.43■□□□□ 0.06
SDC1-204ENST00000429035 ZNF667Q5HYK9 610 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 CNNM4Q6P4Q7 775 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 FAM35AQ86V20 835 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 SPRYD3Q8NCJ5 442 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 CCDC26Q8TAB7 109 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 DDX1Q92499 740 aaKnown RBP15.43■□□□□ 0.06
SDC1-204ENST00000429035 ZNF516Q92618 1163 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 EDEM2Q9BV94 578 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 B3GNT5Q9BYG0 378 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 RNF38Q9H0F5 515 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 TMEM30AQ9NV96 361 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 PCDHGA5Q9Y5G8 931 aa15.43■□□□□ 0.06
SDC1-204ENST00000429035 MYO18AQ92614 2054 aaKnown RBP15.43■□□□□ 0.06
SDC1-204ENST00000429035 ANTXRLA6NF34 631 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 LRRIQ3A6PVS8 624 aaPredicted RBP15.42■□□□□ 0.06
SDC1-204ENST00000429035 SLC9A3R1O14745 358 aaPredicted RBP15.42■□□□□ 0.06
SDC1-204ENST00000429035 OAS1P00973 400 aaKnown RBP15.42■□□□□ 0.06
SDC1-204ENST00000429035 ZSCAN22P10073 491 aaPredicted RBP15.42■□□□□ 0.06
SDC1-204ENST00000429035 IRF1P10914 325 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 ATICP31939 592 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 PPP3CCP48454 512 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 SLC5A3P53794 718 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 SNRPFP62306 86 aaKnown RBP15.42■□□□□ 0.06
SDC1-204ENST00000429035 SLC7A9P82251 487 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 EHHADHQ08426 723 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 ORC1Q13415 861 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 DHCR24Q15392 516 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 BMT2Q1RMZ1 405 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 STPG1Q5TH74 334 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 RNF43Q68DV7 783 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 DDX42Q86XP3 938 aaKnown RBP eCLIP15.42■□□□□ 0.06
SDC1-204ENST00000429035 NUP93Q8N1F7 819 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 USP33Q8TEY7 942 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 CHAMP1Q96JM3 812 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 NACA2Q9H009 215 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 DUSP15Q9H1R2 295 aaPredicted RBP15.42■□□□□ 0.06
SDC1-204ENST00000429035 ZDHHC4Q9NPG8 344 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 VPS45Q9NRW7 570 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 KRT82Q9NSB4 513 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 SERTAD1Q9UHV2 236 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 PCDHA7Q9UN72 937 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 SH3BP1Q9Y3L3 701 aa15.42■□□□□ 0.06
SDC1-204ENST00000429035 AP1G2O75843 785 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 RTN3O95197 1032 aaPredicted RBP15.41■□□□□ 0.06
SDC1-204ENST00000429035 ADH1CP00326 375 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 APODP05090 189 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 ADH5P11766 374 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 TIE1P35590 1138 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 NCOA4Q13772 614 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 GAB4Q2WGN9 574 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 USP39Q53GS9 565 aaKnown RBP15.41■□□□□ 0.06
SDC1-204ENST00000429035 RESP18Q5W5W9 173 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 C12orf40Q86WS4 652 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 SFTPA1Q8IWL2 248 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 C12orf56Q8IXR9 622 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 PDZD8Q8NEN9 1154 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms