RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 ZFYVE27Q5T4F4 411 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 SLC26A9Q7LBE3 791 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 RTN4RL1Q86UN2 441 aaPredicted RBP6.27□□□□□ -1.41
HMGB3-202ENST00000419110 SPATA2LQ8IUW3 424 aaPredicted RBP6.27□□□□□ -1.41
HMGB3-202ENST00000419110 CCDC50Q8IVM0 306 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 RHOT1Q8IXI2 618 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 C7orf61Q8IZ16 206 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 DCP1BQ8IZD4 617 aaKnown RBP6.27□□□□□ -1.41
HMGB3-202ENST00000419110 FUKQ8N0W3 1084 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 NIPA2Q8N8Q9 360 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 UBA3Q8TBC4 463 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 UBXN4Q92575 508 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 RABGGTAQ92696 567 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 TMEM169Q96HH4 297 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 PCED1BQ96HM7 432 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 HES6Q96HZ4 224 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 RBM41Q96IZ5 413 aaKnown RBP6.27□□□□□ -1.41
HMGB3-202ENST00000419110 HSFY1Q96LI6 401 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 RNPC3Q96LT9 517 aaKnown RBP6.27□□□□□ -1.41
HMGB3-202ENST00000419110 ZNF558Q96NG5 402 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 YME1L1Q96TA2 773 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 NCAPGQ9BPX3 1015 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 ACBD6Q9BR61 282 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 HTATIP2Q9BUP3 242 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 OXCT2Q9BYC2 517 aaPredicted RBP6.27□□□□□ -1.41
HMGB3-202ENST00000419110 NRDE2Q9H7Z3 1164 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 LRRC4Q9HBW1 653 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 PNPLA8Q9NP80 782 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 CRTAC1Q9NQ79 661 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 MARCH5Q9NX47 278 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 DNAJB4Q9UDY4 337 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 PACSIN2Q9UNF0 486 aaPredicted RBP6.27□□□□□ -1.41
HMGB3-202ENST00000419110 FAN1Q9Y2M0 1017 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 NME7Q9Y5B8 376 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 TIMM13Q9Y5L4 95 aaPredicted RBP6.27□□□□□ -1.41
HMGB3-202ENST00000419110 SIGLEC16A6NMB1 481 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 DYNC1I1O14576 645 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 NRP1O14786 923 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 TRIM66O15016 1216 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 RNF8O76064 485 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 GJB6O95452 261 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 URODP06132 367 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 KRT7P08729 469 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 LCP1P13796 627 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 CSF2RAP15509 400 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 LMO2P25791 158 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 SDC4P31431 198 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 CXCR5P32302 372 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 MARCKSL1P49006 195 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 ALDH7A1P49419 539 aaKnown RBP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 RWDD2BP57060 319 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 DEFB103AP81534 67 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 CREMQ03060 361 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 ITIH3Q06033 890 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 C2orf54Q08AI8 447 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 BTG3Q14201 252 aaPredicted RBP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 SMC1AQ14683 1233 aaKnown RBP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 ACAP1Q15027 740 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 HADHQ16836 314 aaKnown RBP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 CCDC142Q17RM4 750 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 TCTN1Q2MV58 587 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 CTXN3Q4LDR2 81 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 FAM171A1Q5VUB5 890 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 C8orf74Q6P047 294 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 LLGL2Q6P1M3 1020 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 OLFML1Q6UWY5 402 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 CLEC20AQ6ZU45 233 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 ANKS3Q6ZW76 656 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 ZNF572Q7Z3I7 529 aaPredicted RBP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 POLNQ7Z5Q5 900 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 PHLDB2Q86SQ0 1253 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 PIGZQ86VD9 579 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 ZNF280BQ86YH2 543 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 OR10T2Q8NGX3 314 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 COG1Q8WTW3 980 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 C2orf15Q8WU43 125 aaKnown RBP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 MAIP1Q8WWC4 291 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 RUBCNQ92622 972 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 FAM149B1Q96BN6 582 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 MCRS1Q96EZ8 462 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 FUBP3Q96I24 572 aaKnown RBP eCLIP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 BTBD6Q96KE9 485 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 SLC9A7Q96T83 725 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 TTPALQ9BTX7 342 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 HERC2P3Q9BVR0 1158 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 PRR14Q9BWN1 585 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 DUSP16Q9BY84 665 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 RC3H2Q9HBD1 1191 aaKnown RBP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 ABCB6Q9NP58 842 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 AAASQ9NRG9 546 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 ARGLU1Q9NWB6 273 aaPredicted RBP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 ASNSD1Q9NWL6 643 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 DDX56Q9NY93 547 aaKnown RBP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 ABI2Q9NYB9 513 aaPredicted RBP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 STK39Q9UEW8 545 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 CHORDC1Q9UHD1 332 aaPredicted RBP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 CYTH4Q9UIA0 394 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 STAP1Q9ULZ2 295 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 USTQ9Y2C2 406 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms