RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 YWHAZP63104 245 aaKnown RBP8.78□□□□□ -1
USP54-203ENST00000418501 ROR1Q01973 937 aa8.78□□□□□ -1
USP54-203ENST00000418501 KRT17Q04695 432 aa8.78□□□□□ -1
USP54-203ENST00000418501 DHX9Q08211 1270 aaKnown RBP8.78□□□□□ -1
USP54-203ENST00000418501 MGAT3Q09327 533 aa8.78□□□□□ -1
USP54-203ENST00000418501 MDH1BQ5I0G3 518 aa8.78□□□□□ -1
USP54-203ENST00000418501 KIAA1841Q6NSI8 718 aa8.78□□□□□ -1
USP54-203ENST00000418501 SLC2A14Q8TDB8 520 aa8.78□□□□□ -1
USP54-203ENST00000418501 CD101Q93033 1021 aa8.78□□□□□ -1
USP54-203ENST00000418501 DCLK3Q9C098 648 aa8.78□□□□□ -1
USP54-203ENST00000418501 CENPHQ9H3R5 247 aa8.78□□□□□ -1
USP54-203ENST00000418501 SSX2IPQ9Y2D8 614 aa8.78□□□□□ -1
USP54-203ENST00000418501 RAD54BQ9Y620 910 aa8.78□□□□□ -1
USP54-203ENST00000418501 IKBKGQ9Y6K9 419 aa8.78□□□□□ -1
USP54-203ENST00000418501 E5RJQ4 531 aa8.78□□□□□ -1
USP54-203ENST00000418501 E7EVH7 732 aa8.78□□□□□ -1
USP54-203ENST00000418501 LPXNO60711 386 aa8.78□□□□□ -1
USP54-203ENST00000418501 SEC31AO94979 1220 aaKnown RBP8.78□□□□□ -1
USP54-203ENST00000418501 IGHA2P01877 340 aa8.78□□□□□ -1
USP54-203ENST00000418501 CKBP12277 381 aa8.78□□□□□ -1
USP54-203ENST00000418501 OAS2P29728 719 aaKnown RBP8.78□□□□□ -1
USP54-203ENST00000418501 ADCY2Q08462 1091 aa8.78□□□□□ -1
USP54-203ENST00000418501 PPP1R26Q5T8A7 1209 aaPredicted RBP8.78□□□□□ -1
USP54-203ENST00000418501 WSCD1Q658N2 575 aa8.78□□□□□ -1
USP54-203ENST00000418501 CENPUQ71F23 418 aa8.78□□□□□ -1
USP54-203ENST00000418501 GABPB2Q8TAK5 448 aaPredicted RBP8.78□□□□□ -1
USP54-203ENST00000418501 MYCBPAPQ8TBZ2 947 aa8.78□□□□□ -1
USP54-203ENST00000418501 AENQ8WTP8 325 aaKnown RBP8.78□□□□□ -1
USP54-203ENST00000418501 BTBD6Q96KE9 485 aa8.78□□□□□ -1
USP54-203ENST00000418501 EPAS1Q99814 870 aa8.78□□□□□ -1
USP54-203ENST00000418501 PNPLA8Q9NP80 782 aa8.78□□□□□ -1
USP54-203ENST00000418501 KRT82Q9NSB4 513 aa8.78□□□□□ -1
USP54-203ENST00000418501 COMMD8Q9NX08 183 aa8.78□□□□□ -1
USP54-203ENST00000418501 FAN1Q9Y2M0 1017 aa8.78□□□□□ -1
USP54-203ENST00000418501 CHRNA1P02708 482 aa8.77□□□□□ -1
USP54-203ENST00000418501 CREMQ03060 361 aa8.77□□□□□ -1
USP54-203ENST00000418501 DEUP1Q05D60 604 aa8.77□□□□□ -1
USP54-203ENST00000418501 PTK6Q13882 451 aa8.77□□□□□ -1
USP54-203ENST00000418501 IKBKEQ14164 716 aa8.77□□□□□ -1
USP54-203ENST00000418501 ZNF618Q5T7W0 954 aa8.77□□□□□ -1
USP54-203ENST00000418501 BTBD8Q5XKL5 378 aa8.77□□□□□ -1
USP54-203ENST00000418501 C2orf15Q8WU43 125 aaKnown RBP8.77□□□□□ -1
USP54-203ENST00000418501 NSMCE1Q8WV22 266 aa8.77□□□□□ -1
USP54-203ENST00000418501 SLITRK1Q96PX8 696 aa8.77□□□□□ -1
USP54-203ENST00000418501 KLC2Q9H0B6 622 aa8.77□□□□□ -1
USP54-203ENST00000418501 POPDC2Q9HBU9 364 aa8.77□□□□□ -1
USP54-203ENST00000418501 PPP1R12AO14974 1030 aaPredicted RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 ZBED1O96006 694 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 MX2P20592 715 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 HTR7P34969 479 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 KPNA1P52294 538 aaPredicted RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 CBX1P83916 185 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 DNAJC21Q5F1R6 531 aaKnown RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 C6orf118Q5T5N4 469 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 ERMARDQ5T6L9 678 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 LGSNQ5TDP6 509 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 FAM183BPQ6ZVS7 135 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 FAM172AQ8WUF8 416 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 KRT35Q92764 455 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 HEMGNQ9BXL5 484 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 FUT8Q9BYC5 575 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 MTIF3Q9H2K0 278 aaKnown RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 PCSK1NQ9UHG2 260 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 PTPN22Q9Y2R2 807 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 SF3B1O75533 1304 aaKnown RBP eCLIP8.77□□□□□ -1.013e-9■■■■■ 206.8
USP54-203ENST00000418501 CASTOR2A6NHX0 329 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 NCAM2O15394 837 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 RTN3O95197 1032 aaPredicted RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 TRUB2O95900 331 aaKnown RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 AMHP03971 560 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 SSTR3P32745 418 aaPredicted RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 RFC1P35251 1148 aaPredicted RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 NR1H3Q13133 447 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 SNX1Q13596 522 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 CDO1Q16878 200 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 ELMSAN1Q6PJG2 1045 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 CCDC25Q86WR0 208 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 NPAS4Q8IUM7 802 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 ALG3Q92685 438 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 SUSD3Q96L08 255 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 CPXM1Q96SM3 734 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 SLC9A7Q96T83 725 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 ZNF670Q9BS34 389 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 OLA1Q9NTK5 396 aaKnown RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 PAK5Q9P286 719 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 SNX24Q9Y343 169 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 PCDHB5Q9Y5E4 795 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 EIF3HO15372 352 aaKnown RBP eCLIP8.77□□□□□ -1.01
USP54-203ENST00000418501 ZMYND10O75800 440 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 POMCP01189 267 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 IFNB1P01574 187 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 HSPA9P38646 679 aaKnown RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 GRIK1P39086 918 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 PSEN1P49768 467 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 TKTL1P51854 596 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 VCPP55072 806 aaKnown RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 ARL4CP56559 192 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 EIF3EP60228 445 aaKnown RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 VSTM1Q6UX27 236 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 BBS12Q6ZW61 710 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms