RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 SLC47A2Q86VL8 602 aa11.77□□□□□ -0.53
TTC28-201ENST00000397906 WWP1Q9H0M0 922 aa11.77□□□□□ -0.53
TTC28-201ENST00000397906 C17orf75Q9HAS0 396 aa11.77□□□□□ -0.53
TTC28-201ENST00000397906 HPS5Q9UPZ3 1129 aa11.77□□□□□ -0.53
TTC28-201ENST00000397906 SERPINI2O75830 405 aa11.77□□□□□ -0.53
TTC28-201ENST00000397906 CTDNEP1O95476 244 aa11.77□□□□□ -0.53
TTC28-201ENST00000397906 FDPSP14324 419 aaKnown RBP11.77□□□□□ -0.53
TTC28-201ENST00000397906 CLEC4FQ8N1N0 589 aa11.77□□□□□ -0.53
TTC28-201ENST00000397906 EMC1Q8N766 993 aa11.77□□□□□ -0.53
TTC28-201ENST00000397906 MAP3K14Q99558 947 aa11.77□□□□□ -0.53
TTC28-201ENST00000397906 RBM12Q9NTZ6 932 aaKnown RBP11.77□□□□□ -0.53
TTC28-201ENST00000397906 H2AFY2Q9P0M6 372 aaPredicted RBP11.77□□□□□ -0.53
TTC28-201ENST00000397906 FOXN3O00409 490 aaPredicted RBP11.76□□□□□ -0.53
TTC28-201ENST00000397906 P4HA2O15460 535 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 KPNA6O60684 536 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 ITIH2P19823 946 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 C16orf87Q6PH81 154 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 ACOX1Q15067 660 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 PDGFCQ9NRA1 345 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 LRRIQ1Q96JM4 1722 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 MAP2P11137 1827 aaKnown RBP11.76□□□□□ -0.53
TTC28-201ENST00000397906 SH3BGRP55822 239 aaPredicted RBP11.76□□□□□ -0.53
TTC28-201ENST00000397906 SEMA3FQ13275 785 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 MSRAQ9UJ68 235 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 ALG6Q9Y672 507 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 GJC2Q5T442 439 aaPredicted RBP11.76□□□□□ -0.53
TTC28-201ENST00000397906 PHF21AQ96BD5 680 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 AHCYL2Q96HN2 611 aaKnown RBP11.76□□□□□ -0.53
TTC28-201ENST00000397906 IL25Q9H293 177 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 NSMCE4AQ9NXX6 385 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 SLC26A4O43511 780 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 CCDC130P13994 396 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 SLC39A12Q504Y0 691 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 TRIM65Q6PJ69 517 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 CYGBQ8WWM9 190 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 CELF6Q96J87 481 aaKnown RBP11.76□□□□□ -0.53
TTC28-201ENST00000397906 AIM2O14862 343 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 ZBTB39O15060 712 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 GUCA1CO95843 209 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 TROAPQ12815 778 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 FAM180AQ6UWF9 173 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 CXCL17Q6UXB2 119 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 STX19Q8N4C7 294 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 CCL23P55773 120 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 ADIGQ0VDE8 80 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 CGRRF1Q99675 332 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 NDE1Q9NXR1 346 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 RUVBL2Q9Y230 463 aaKnown RBP11.76□□□□□ -0.53
TTC28-201ENST00000397906 FAM83EQ2M2I3 478 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 ACAD10Q6JQN1 1059 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 TRMT11Q7Z4G4 463 aaKnown RBP11.76□□□□□ -0.53
TTC28-201ENST00000397906 USP13Q92995 863 aaPredicted RBP11.76□□□□□ -0.53
TTC28-201ENST00000397906 SERAC1Q96JX3 654 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 PLEKP08567 350 aaPredicted RBP11.76□□□□□ -0.53
TTC28-201ENST00000397906 AMPD2Q01433 879 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 LPCAT1Q8NF37 534 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 ATG4AQ8WYN0 398 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 RPS6KL1Q9Y6S9 549 aa11.76□□□□□ -0.53
TTC28-201ENST00000397906 FICDQ9BVA6 458 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 YY1AP1Q9H869 796 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 SPACA6W5XKT8 324 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 PGM1P36871 562 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 PSEN2P49810 448 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 CYP2W1Q8TAV3 490 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 CLPBQ9H078 707 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 KANSL3Q9P2N6 904 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 DPP7Q9UHL4 492 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 STAU1O95793 577 aaKnown RBP11.75□□□□□ -0.53
TTC28-201ENST00000397906 IL1R1P14778 569 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 PGS1Q32NB8 556 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 POM121L1PQ3SYA9 428 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 CD302Q8IX05 232 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 VPS26AO75436 327 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 DGKZQ13574 1117 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 PTAR1Q7Z6K3 402 aaPredicted RBP11.75□□□□□ -0.53
TTC28-201ENST00000397906 ZNF555Q8NEP9 628 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 PCDHB5Q9Y5E4 795 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 SKAP2O75563 359 aaPredicted RBP11.75□□□□□ -0.53
TTC28-201ENST00000397906 PSMC6P62333 389 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 DEFB115Q30KQ5 88 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 TTLL9Q3SXZ7 439 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 NLRP14Q86W24 1093 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 PPIL6Q8IXY8 311 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 EIF2AQ9BY44 585 aaKnown RBP11.75□□□□□ -0.53
TTC28-201ENST00000397906 ZDHHC9Q9Y397 364 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 NRXN1Q9ULB1 1477 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 VDRP11473 427 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 GRK3P35626 688 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 MLH1P40692 756 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 MAGEA4P43358 317 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 IKBKEQ14164 716 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 INPP5AQ14642 412 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 ALFQ53S48 1182 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 OTOAQ7RTW8 1153 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 GTF2A1LQ9UNN4 478 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 AP4E1Q9UPM8 1137 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 RAB27AP51159 221 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 PDCD2LQ9BRP1 358 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 USP18Q9UMW8 372 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 ADAMTS13Q76LX8 1427 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms