RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 RXFP1Q9HBX9 757 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 ARHGEF3Q9NR81 526 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 UBOX5O94941 541 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 PSMC3P17980 439 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 TGM2P21980 687 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 CNTFP26441 200 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 TFDP3Q5H9I0 405 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 ECSITQ9BQ95 431 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 TMEM165Q9HC07 324 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 TRIM17Q9Y577 477 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 RPS6KL1Q9Y6S9 549 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 SERPINB8P50452 374 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 RPS6P62753 249 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 CYP4A22Q5TCH4 519 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 ARMC3Q5W041 872 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 UBA3Q8TBC4 463 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 APBB2Q92870 758 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 VPS50Q96JG6 964 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 KCNH7Q9NS40 1196 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 TAGLN3Q9UI15 199 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 CNOT7Q9UIV1 285 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 SLC37A4O43826 429 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 AKT1P31749 480 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 PTPN7P35236 360 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 CSTF3Q12996 717 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 ATP1A4Q13733 1029 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 ARMCX4Q5H9R4 360 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 HPDLQ96IR7 371 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 ARHGAP20Q9P2F6 1191 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 SPATA2Q9UM82 520 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 INO80Q9ULG1 1556 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 SLCO1B7G3V0H7 640 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 TM9SF1O15321 606 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 GAS2O43903 313 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 SGPL1O95470 568 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 GTF2H3Q13889 308 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 PDK2Q15119 407 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 CCNG2Q16589 344 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 TRMT5Q32P41 509 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 CCDC60Q8IWA6 550 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 SLC25A41Q8N5S1 370 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 PACSIN1Q9BY11 444 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 NOL6Q9H6R4 1146 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 LSM7Q9UK45 103 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 ATF5Q9Y2D1 282 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 PCDHGA3Q9Y5H0 932 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 ADGRA3Q8IWK6 1321 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 GPR75-ASB3A0A0A6YYF3 556 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 CFAP99D6REC4 459 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 MSH4O15457 936 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 SEMA3DO95025 777 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 GH1P01241 217 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 POU4F1Q01851 419 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 EXD1Q8NHP7 514 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 PAFAH2Q99487 392 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 RUSC1Q9BVN2 902 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 ZNF518BQ9C0D4 1074 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 ADGRA2Q96PE1 1338 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 F8VZ95 297 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 TOMM70O94826 608 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 CYP11B1P15538 503 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 TOB1P50616 345 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 FBXW4P57775 412 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 PTENP60484 403 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 PPP4CP60510 307 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 FCHO2Q0JRZ9 810 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 SNX17Q15036 470 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 EZH2Q15910 746 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 MFSD14CQ5VZR4 134 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 IL31Q6EBC2 164 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 SLC26A11Q86WA9 606 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 SHCBP1LQ9BZQ2 653 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 KIAA1257Q9ULG3 409 aa10.61□□□□□ -0.71
LIMCH1-203ENST00000396595 SDR42E2A6NKP2 422 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 AHCYL1O43865 530 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 HBP1O60381 514 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 CAMTA2O94983 1202 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 MFN2O95140 757 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 PNPLA4P41247 253 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 GEMP55040 296 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 KLHL12Q53G59 568 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 SEMA6BQ9H3T3 888 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 H2AFY2Q9P0M6 372 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 ZCCHC11Q5TAX3 1644 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 TPST1O60507 370 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 BAIAP3O94812 1187 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 FAXCQ5TGI0 409 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 PLEKHA7Q6IQ23 1121 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 C11orf63Q6NUN7 778 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 SNX31Q8N9S9 440 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 FAM151AQ8WW52 585 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 GPRASP2Q96D09 838 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 EURLQ9NYK6 297 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 SELENONQ9NZV5 590 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 DSEQ9UL01 958 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 ITM2BQ9Y287 266 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 CDC40O60508 579 aaKnown RBP eCLIP10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 PROSCO94903 275 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 ARIH2O95376 493 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms