RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 OPLAHO14841 1288 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 JAK1P23458 1154 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 QRICH1Q2TAL8 776 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 CYP4A22Q5TCH4 519 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 C4orf22Q6V702 233 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 FAM45AQ8TCE6 357 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 RAVER2Q9HCJ3 691 aaKnown RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 DCP1AQ9NPI6 582 aaPredicted RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 COMMD3-BMI1R4GMX3 469 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 FGFR3P22607 806 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 VAC14Q08AM6 782 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 ZFP1Q6P2D0 407 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 RNF19BQ6ZMZ0 732 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 KRT73Q86Y46 540 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 GIPC3Q8TF64 312 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 HDAC7Q8WUI4 952 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 BDH2Q9BUT1 245 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 PLGRKTQ9HBL7 147 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 AVENQ9NQS1 362 aaPredicted RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 CPDO75976 1380 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 H7C1W4 665 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 SNAP23O00161 211 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 PTRHD1Q6GMV3 140 aaKnown RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 ZNF554Q86TJ5 538 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 PABPC5Q96DU9 382 aaKnown RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 GPRC5DQ9NZD1 345 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 INPP4BO15327 924 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 BAIAP3O94812 1187 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 IL6P05231 212 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 SLC1A6P48664 564 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 NCALDP61601 193 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 SYTL3Q4VX76 610 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 ACAD10Q6JQN1 1059 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 RIPOR1Q6ZS17 1223 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 ARHGEF19Q8IW93 802 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 POLR1BQ9H9Y6 1135 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 FAM49BQ9NUQ9 324 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 CPSF1Q10570 1443 aaKnown RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 IGSF1Q8N6C5 1336 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 UBAP1LF5GYI3 381 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 SEMA3DO95025 777 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 CDH3P22223 829 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 KRT20P35900 424 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 GJA8P48165 433 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 TAB1Q15750 504 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 ATP6AP1LQ52LC2 224 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 CACHD1Q5VU97 1274 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 RBM44Q6ZP01 1051 aaKnown RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 WDR36Q8NI36 951 aaKnown RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 UTP15Q8TED0 518 aaKnown RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 SH2D3AQ9BRG2 576 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 COMMD8Q9NX08 183 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 CFAP74Q9C0B2 1584 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 LAMC3Q9Y6N6 1575 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 BTN3A3O00478 584 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 ATG7O95352 703 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 CD44P16070 742 aaKnown RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 FEN1P39748 380 aaKnown RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 PUDPQ08623 228 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 FOXP4Q8IVH2 680 aaPredicted RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 FNIP1Q8TF40 1166 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 SCFD2Q8WU76 684 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 MMADHCQ9H3L0 296 aaPredicted RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 ATXN10Q9UBB4 475 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 SLC24A2Q9UI40 661 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 TMCC3Q9ULS5 477 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 SLC30A1Q9Y6M5 507 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 SOAT2O75908 522 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 CHRM3P20309 590 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 PRDX5P30044 214 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 RPS7P62081 194 aaKnown RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 TTC27Q6P3X3 843 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 MARK2Q7KZI7 788 aaKnown RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 PI4K2AQ9BTU6 479 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 TJP2Q9UDY2 1190 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 POLIQ9UNA4 740 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 CLCA2Q9UQC9 943 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 RGS4P49798 205 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 PKN2Q16513 984 aaKnown RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 TMC3Q7Z5M5 1100 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 ADCK2Q7Z695 626 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 DHFR2Q86XF0 187 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 EFHBQ8N7U6 833 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 TFB1MQ8WVM0 346 aaKnown RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 CNKSR1Q969H4 720 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 DDX50Q9BQ39 737 aaKnown RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 SAR1AQ9NR31 198 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 ZNF624Q9P2J8 865 aaPredicted RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 CYP2R1Q6VVX0 501 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 TMEM26Q6ZUK4 368 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 ATP8B4Q8TF62 1192 aa12.24□□□□□ -0.45
SYNPO-202ENST00000394243 CNOT7Q9UIV1 285 aaKnown RBP12.24□□□□□ -0.45
SYNPO-202ENST00000394243 CPA3P15088 417 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 ITGAXP20702 1163 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 GPD1P21695 349 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 GSSP48637 474 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 EPHA7Q15375 998 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 CLEC16AQ2KHT3 1053 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms