RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 ARID3AQ99856 593 aa20.1■□□□□ 0.81
CKS1B-203ENST00000368439 METTL14Q9HCE5 456 aaKnown RBP20.1■□□□□ 0.81
CKS1B-203ENST00000368439 HPS4Q9NQG7 708 aa20.1■□□□□ 0.81
CKS1B-203ENST00000368439 GKN1Q9NS71 199 aa20.1■□□□□ 0.81
CKS1B-203ENST00000368439 KRT82Q9NSB4 513 aa20.1■□□□□ 0.81
CKS1B-203ENST00000368439 TRPM5Q9NZQ8 1165 aa20.1■□□□□ 0.81
CKS1B-203ENST00000368439 MRPS17Q9Y2R5 130 aaKnown RBP20.1■□□□□ 0.81
CKS1B-203ENST00000368439 FANCMQ8IYD8 2048 aa20.1■□□□□ 0.81
CKS1B-203ENST00000368439 MYO16Q9Y6X6 1858 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 USP34Q70CQ2 3546 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 VPS13AQ96RL7 3174 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 BICDL2A1A5D9 508 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 FAM92AA1XBS5 289 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 RTN3O95197 1032 aaPredicted RBP20.09■□□□□ 0.81
CKS1B-203ENST00000368439 CKMP06732 381 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 PFKLP17858 780 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 HDCP19113 662 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 YWHAQP27348 245 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 RPS9P46781 194 aaKnown RBP20.09■□□□□ 0.81
CKS1B-203ENST00000368439 SLC5A3P53794 718 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 STX17P56962 302 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 PAK1Q13153 545 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 WDR44Q5JSH3 913 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 TXNDC11Q6PKC3 985 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 MAML2Q8IZL2 1156 aaPredicted RBP20.09■□□□□ 0.81
CKS1B-203ENST00000368439 TTC8Q8TAM2 541 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 MSANTD3Q96H12 275 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 RNF38Q9H0F5 515 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 C8orf33Q9H7E9 229 aaPredicted RBP20.09■□□□□ 0.81
CKS1B-203ENST00000368439 THG1LQ9NWX6 298 aaKnown RBP20.09■□□□□ 0.81
CKS1B-203ENST00000368439 ARHGAP26Q9UNA1 814 aa20.09■□□□□ 0.81
CKS1B-203ENST00000368439 OTOL1A6NHN0 477 aaPredicted RBP20.08■□□□□ 0.81
CKS1B-203ENST00000368439 HHLA1C9JL84 531 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 SPECC1L-ADORA2AF8WAN1 911 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 PMM2O15305 246 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 OAS1P00973 400 aaKnown RBP20.08■□□□□ 0.81
CKS1B-203ENST00000368439 CTHP32929 405 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 MAGEA9P43362 315 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 FMO5P49326 533 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 TRIM68Q6AZZ1 485 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 CLEC20AQ6ZU45 233 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 C1orf210Q8IVY1 113 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 OVCA2Q8WZ82 227 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 CHFRQ96EP1 664 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 CYFIP2Q96F07 1278 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 MED15Q96RN5 788 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 FAM124BQ9H5Z6 455 aaPredicted RBP20.08■□□□□ 0.81
CKS1B-203ENST00000368439 CISHQ9NSE2 258 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 COMMD8Q9NX08 183 aa20.08■□□□□ 0.81
CKS1B-203ENST00000368439 NDRG2Q9UN36 371 aaKnown RBP20.08■□□□□ 0.81
CKS1B-203ENST00000368439 ZDHHC11BP0C7U3 371 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 ADORA2BP29275 332 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 NBL1P41271 181 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 KPNA1P52294 538 aaPredicted RBP20.07■□□□□ 0.8
CKS1B-203ENST00000368439 RAD23BP54727 409 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 MARSP56192 900 aaKnown RBP20.07■□□□□ 0.8
CKS1B-203ENST00000368439 MAP3K7CLP57077 242 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 SLC7A9P82251 487 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 IFRD2Q12894 506 aaPredicted RBP20.07■□□□□ 0.8
CKS1B-203ENST00000368439 MTF1Q14872 753 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 ITPRIPL2Q3MIP1 535 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 SNX30Q5VWJ9 437 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 RALGPS2Q86X27 583 aaPredicted RBP20.07■□□□□ 0.8
CKS1B-203ENST00000368439 UBR7Q8N806 425 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 SLC4A11Q8NBS3 891 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 SLITRK1Q96PX8 696 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 CLSTN2Q9H4D0 955 aa20.07■□□□□ 0.8
CKS1B-203ENST00000368439 PROB1E7EW31 1015 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 NCAM2O15394 837 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 FAM200BP0CF97 657 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 CHRNB1P11230 501 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 PGFP49763 221 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 PDE6CP51160 858 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 RUNX3Q13761 415 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 CCDC40Q4G0X9 1142 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 ZNF394Q53GI3 561 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 PPP1R26Q5T8A7 1209 aaPredicted RBP20.06■□□□□ 0.8
CKS1B-203ENST00000368439 C1orf228Q6PIY5 440 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 GPRIN1Q7Z2K8 1008 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 ALYREFQ86V81 257 aaKnown RBP20.06■□□□□ 0.8
CKS1B-203ENST00000368439 TRIM59Q8IWR1 403 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 TTC39CQ8N584 583 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 PDZD8Q8NEN9 1154 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 LMO3Q8TAP4 145 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 SH3RF2Q8TEC5 729 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 FBXO32Q969P5 355 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 EBF3Q9H4W6 596 aa20.06■□□□□ 0.8
CKS1B-203ENST00000368439 CHORDC1Q9UHD1 332 aaPredicted RBP20.06■□□□□ 0.8
CKS1B-203ENST00000368439 ARSAP15289 507 aa20.05■□□□□ 0.8
CKS1B-203ENST00000368439 MRE11P49959 708 aa20.05■□□□□ 0.8
CKS1B-203ENST00000368439 CUL2Q13617 745 aa20.05■□□□□ 0.8
CKS1B-203ENST00000368439 OSCP1Q8WVF1 389 aa20.05■□□□□ 0.8
CKS1B-203ENST00000368439 TMEM176AQ96HP8 235 aa20.05■□□□□ 0.8
CKS1B-203ENST00000368439 SRRTQ9BXP5 876 aaKnown RBP20.05■□□□□ 0.8
CKS1B-203ENST00000368439 CHRDQ9H2X0 955 aa20.05■□□□□ 0.8
CKS1B-203ENST00000368439 LMAN1LQ9HAT1 526 aa20.05■□□□□ 0.8
CKS1B-203ENST00000368439 LMBRD1Q9NUN5 540 aa20.05■□□□□ 0.8
CKS1B-203ENST00000368439 LEFTY2O00292 366 aa20.04■□□□□ 0.8
CKS1B-203ENST00000368439 SP9P0CG40 484 aa20.04■□□□□ 0.8
CKS1B-203ENST00000368439 TRIM21P19474 475 aaKnown RBP20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms