RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 C2CD4BA6NLJ0 364 aa19.62■□□□□ 0.73
CLN3-204ENST00000357857 H7C4K7 107 aa19.62■□□□□ 0.73
CLN3-204ENST00000357857 ZNF143P52747 638 aaPredicted RBP19.62■□□□□ 0.73
CLN3-204ENST00000357857 ZNF211Q13398 564 aaPredicted RBP19.62■□□□□ 0.73
CLN3-204ENST00000357857 TAF5Q15542 800 aa19.62■□□□□ 0.73
CLN3-204ENST00000357857 RSRC2Q7L4I2 434 aaKnown RBP19.62■□□□□ 0.73
CLN3-204ENST00000357857 SIX6OS1Q8N1H7 587 aa19.62■□□□□ 0.73
CLN3-204ENST00000357857 RXFP2Q8WXD0 754 aa19.62■□□□□ 0.73
CLN3-204ENST00000357857 KHSRPQ92945 711 aaKnown RBP eCLIP19.62■□□□□ 0.73
CLN3-204ENST00000357857 IGSF21Q96ID5 467 aa19.62■□□□□ 0.73
CLN3-204ENST00000357857 RNPC3Q96LT9 517 aaKnown RBP19.62■□□□□ 0.73
CLN3-204ENST00000357857 ZNF558Q96NG5 402 aa19.62■□□□□ 0.73
CLN3-204ENST00000357857 YME1L1Q96TA2 773 aa19.62■□□□□ 0.73
CLN3-204ENST00000357857 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.62■□□□□ 0.733e-6■□□□□ 10.1
CLN3-204ENST00000357857 TTPALQ9BTX7 342 aa19.62■□□□□ 0.73
CLN3-204ENST00000357857 DMAP1Q9NPF5 467 aaPredicted RBP19.62■□□□□ 0.73
CLN3-204ENST00000357857 PGRMC1O00264 195 aaKnown RBP19.61■□□□□ 0.73
CLN3-204ENST00000357857 PDGFRAP16234 1089 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 FLT3P36888 993 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 TKTL1P51854 596 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 RABGGTBP53611 331 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 ITIH3Q06033 890 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 ACAP1Q15027 740 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 NFE2Q16621 373 aaPredicted RBP19.61■□□□□ 0.73
CLN3-204ENST00000357857 EFHC1Q5JVL4 640 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 RTP2Q5QGT7 225 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 TEX35Q5T0J7 233 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 SEL1L2Q5TEA6 688 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 TAS1R1Q7RTX1 841 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 UBXN4Q92575 508 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 CNPY3Q9BT09 278 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 ASNSD1Q9NWL6 643 aa19.61■□□□□ 0.73
CLN3-204ENST00000357857 TTC7AQ9ULT0 858 aaPredicted RBP19.61■□□□□ 0.73
CLN3-204ENST00000357857 MRPL42Q9Y6G3 142 aaKnown RBP19.61■□□□□ 0.73
CLN3-204ENST00000357857 CARNS1A5YM72 827 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 HHLA1C9JL84 531 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 DPYSL4O14531 572 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 FBXO21O94952 628 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 EFEMP2O95967 443 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 LAG3P18627 525 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 TUBB4BP68371 445 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 ADCY1Q08828 1119 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 RAB41Q5JT25 222 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 TRNP1Q6NT89 227 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 PSRC1Q6PGN9 363 aaPredicted RBP19.6■□□□□ 0.73
CLN3-204ENST00000357857 ANKS3Q6ZW76 656 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 ARCQ7LC44 396 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 SPATA4Q8NEY3 305 aa19.6■□□□□ 0.73
CLN3-204ENST00000357857 OXCT2Q9BYC2 517 aaPredicted RBP19.6■□□□□ 0.73
CLN3-204ENST00000357857 PYGMP11217 842 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 MRPS5P82675 430 aaKnown RBP19.59■□□□□ 0.73
CLN3-204ENST00000357857 C2orf54Q08AI8 447 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 NAA30Q147X3 362 aaPredicted RBP19.59■□□□□ 0.73
CLN3-204ENST00000357857 ERCC6LQ2NKX8 1250 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 USP41Q3LFD5 358 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 TMEM240Q5SV17 173 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 LRRC38Q5VT99 294 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 SLC39A11Q8N1S5 342 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 COLGALT1Q8NBJ5 622 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 FUBP3Q96I24 572 aaKnown RBP eCLIP19.59■□□□□ 0.73
CLN3-204ENST00000357857 PLVAPQ9BX97 442 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 PNPLA8Q9NP80 782 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 ABI2Q9NYB9 513 aaPredicted RBP19.59■□□□□ 0.73
CLN3-204ENST00000357857 MKI67P46013 3256 aaKnown RBP19.59■□□□□ 0.73
CLN3-204ENST00000357857 TBC1D4O60343 1298 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 LRCH4O75427 683 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 RNF8O76064 485 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 TCF4P15884 667 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 CYP2F1P24903 491 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 GJC1P36383 396 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 NDUFV1P49821 464 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 EPHB4P54760 987 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 CLUL1Q15846 466 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 GPRIN1Q7Z2K8 1008 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 KATNAL2Q8IYT4 538 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 RNF168Q8IYW5 571 aaPredicted RBP19.59■□□□□ 0.73
CLN3-204ENST00000357857 NOA1Q8NC60 698 aaKnown RBP19.59■□□□□ 0.73
CLN3-204ENST00000357857 HTATIP2Q9BUP3 242 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 VN1R3Q9BXE9 311 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 ULBP1Q9BZM6 244 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 CNGB3Q9NQW8 809 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 PCDHB5Q9Y5E4 795 aa19.59■□□□□ 0.73
CLN3-204ENST00000357857 HSF2BPO75031 334 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 GJB5O95377 273 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 FGGP02679 453 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 SYN1P17600 705 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 DESP17661 470 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 SDC4P31431 198 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 GRIK1P39086 918 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 HADHQ16836 314 aaKnown RBP19.58■□□□□ 0.72
CLN3-204ENST00000357857 CCDC14Q49A88 953 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 AADACL2Q6P093 401 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 ARFGAP1Q8N6T3 406 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 TSC1Q92574 1164 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 NDRG1Q92597 394 aaKnown RBP19.58■□□□□ 0.72
CLN3-204ENST00000357857 TMEM169Q96HH4 297 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 CFAP57Q96MR6 1250 aa19.58■□□□□ 0.72
CLN3-204ENST00000357857 NAP1L3Q99457 506 aaPredicted RBP19.58■□□□□ 0.72
CLN3-204ENST00000357857 CCDC85CA6NKD9 419 aa19.57■□□□□ 0.72
CLN3-204ENST00000357857 SART1O43290 800 aaKnown RBP19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms