RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SIRPGQ9P1W8 387 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 CLEC11AQ9Y240 323 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 ADAMTSL1Q8N6G6 1762 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 IQANK1A0A1B0GTG1 560 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 TMEM150BA6NC51 233 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 TTLL13PA6NNM8 815 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 TRIM49D1C9J1S8 452 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 I3L4J1 428 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 DNAJA2O60884 412 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 SNNO75324 88 aaPredicted RBP7.08□□□□□ -1.28
VPS39-202ENST00000348544 VARSP26640 1264 aaKnown RBP7.08□□□□□ -1.28
VPS39-202ENST00000348544 PMLP29590 882 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 RPL22P35268 128 aaKnown RBP7.08□□□□□ -1.28
VPS39-202ENST00000348544 CDKN2BP42772 138 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 RPL26P61254 145 aaKnown RBP7.08□□□□□ -1.28
VPS39-202ENST00000348544 ZNF200P98182 395 aaPredicted RBP7.08□□□□□ -1.28
VPS39-202ENST00000348544 OGDHQ02218 1023 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 GCNT1Q02742 428 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 TMED1Q13445 227 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 GRAMD1BQ3KR37 738 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 ZFYVE27Q5T4F4 411 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 MAP3K21Q5TCX8 1036 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 DENND5BQ6ZUT9 1274 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 E2F7Q96AV8 911 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 ZNF778Q96MU6 729 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 BTBD9Q96Q07 612 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.08□□□□□ -1.28
VPS39-202ENST00000348544 LZTS1Q9Y250 596 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 INPP5FQ9Y2H2 1132 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 PLLPQ9Y342 182 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 TELO2Q9Y4R8 837 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 PCDHB2Q9Y5E7 798 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 TMEM221A6NGB7 291 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 CCDC160A6NGH7 325 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 KBTBD13C9JR72 458 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 F8VP50 259 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 DDX39AO00148 427 aaKnown RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 COPEO14579 308 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 HNRNPCP07910 306 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS39-202ENST00000348544 MAPTP10636 758 aaKnown RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 ATP6V1B1P15313 513 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 ELK3P41970 407 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 NCKAP1LP55160 1127 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 MYBPC1Q00872 1141 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 CBX3Q13185 183 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 PEX6Q13608 980 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 TBCCQ15814 346 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 TCHHL1Q5QJ38 904 aaPredicted RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 RABGAP1LQ5R372 815 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 OGFRL1Q5TC84 451 aaPredicted RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 LIN9Q5TKA1 542 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 TPTE2Q6XPS3 522 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 ZCCHC23Q6ZST2 131 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 ZNF554Q86TJ5 538 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 HPS6Q86YV9 775 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 SLF2Q8IX21 1173 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 RIN3Q8TB24 985 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 FEZF2Q8TBJ5 459 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 HSPBAP1Q96EW2 488 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 RILPQ96NA2 401 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 KIFC3Q9BVG8 833 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 SHCBP1LQ9BZQ2 653 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 XPO7Q9UIA9 1087 aaKnown RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 CDH22Q9UJ99 828 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 POMPQ9Y244 141 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 SIPA1L1O43166 1804 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 A0A1B0GTW7 788 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 DENRO43583 198 aaKnown RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 PEX1O43933 1283 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 TOP3BO95985 862 aaKnown RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 INHBAP08476 426 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 FUT4P22083 530 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 PTPN7P35236 360 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 SERPINB6P35237 376 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 PEX3P56589 373 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 DYNLT1P63172 113 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 OTUD4Q01804 1114 aaKnown RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 NFIAQ12857 509 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 MTA1Q13330 715 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 DCTN2Q13561 401 aaKnown RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 CYLC2Q14093 348 aaPredicted RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 SYCP2LQ5T4T6 812 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 SPOPLQ6IQ16 392 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 SLC39A4Q6P5W5 647 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 KLHL35Q6PF15 583 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 AMIGO3Q86WK7 504 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 ZNF677Q86XU0 584 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 MAP7D3Q8IWC1 876 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 ICA1LQ8NDH6 482 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 CEP70Q8NHQ1 597 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 PIP4K2CQ8TBX8 421 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 ACTL9Q8TC94 416 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 ZNF516Q92618 1163 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 DCUN1D1Q96GG9 259 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 MMP19Q99542 508 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 SENP7Q9BQF6 1050 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 CYP4F11Q9HBI6 524 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 MRPL47Q9HD33 250 aaKnown RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 TIMMDC1Q9NPL8 285 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 ARHGEF38Q9NXL2 777 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms