RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 GOLGA2P5Q9HBQ8 144 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 MED4Q9NPJ6 270 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 RSPH14Q9UHP6 348 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 HPCAL4Q9UM19 191 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 GRIN2DO15399 1336 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 GOLGA8SH3BPF8 625 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 HCRTO43612 131 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 PHF2O75151 1096 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 CHRNA1P02708 482 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 ERBB2P04626 1255 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 ASGR1P07306 291 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 RARAP10276 462 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 VDRP11473 427 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 OAS2P29728 719 aaKnown RBP9.73□□□□□ -0.85
ATG4A-202ENST00000345734 ECHS1P30084 290 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 GJC1P36383 396 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 EPHB4P54760 987 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 SOX4Q06945 474 aaPredicted RBP9.73□□□□□ -0.85
ATG4A-202ENST00000345734 SIX1Q15475 284 aaPredicted RBP9.73□□□□□ -0.85
ATG4A-202ENST00000345734 DEFB115Q30KQ5 88 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 TWF2Q6IBS0 349 aaKnown RBP9.73□□□□□ -0.85
ATG4A-202ENST00000345734 TTC27Q6P3X3 843 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 DCUN1D2Q6PH85 259 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 CCDC26Q8TAB7 109 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 GPR152Q8TDT2 470 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 C18orf8Q96DM3 657 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 IFT43Q96FT9 208 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 UBQLN1Q9UMX0 589 aaKnown RBP9.73□□□□□ -0.85
ATG4A-202ENST00000345734 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.73□□□□□ -0.85
ATG4A-202ENST00000345734 TRPV2Q9Y5S1 764 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 MEIS3P2A8K0S8 358 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 F8VP50 259 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 PSMC1P62191 440 aaKnown RBP9.73□□□□□ -0.85
ATG4A-202ENST00000345734 NKX3-2P78367 333 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 PAK2Q13177 524 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 ATP13A4Q4VNC1 1196 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 SGO2Q562F6 1265 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 XKR4Q5GH76 650 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 EMBQ6PCB8 327 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 MAATS1Q7Z4T9 603 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 ANKS1BQ7Z6G8 1248 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 C3orf20Q8ND61 904 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 KLHDC9Q8NEP7 349 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.73□□□□□ -0.85
ATG4A-202ENST00000345734 CD99L2Q8TCZ2 262 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 MAGOHBQ96A72 148 aaKnown RBP9.73□□□□□ -0.85
ATG4A-202ENST00000345734 LPIN3Q9BQK8 851 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 NT5C1AQ9BXI3 368 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 TRIM31Q9BZY9 425 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 NEUROG2Q9H2A3 272 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 KLHL11Q9NVR0 708 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 IP6K2Q9UHH9 426 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 ST3GAL5Q9UNP4 418 aa9.73□□□□□ -0.85
ATG4A-202ENST00000345734 M0QZ92 97 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 PIK3R2O00459 728 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 PIRO00625 290 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 POLR3GO15318 223 aaPredicted RBP9.72□□□□□ -0.85
ATG4A-202ENST00000345734 DAPK3O43293 454 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 PSTPIP1O43586 416 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 GDF9O60383 454 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 RPS6KA5O75582 802 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 TRPA1O75762 1119 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 KCNE1P15382 129 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 HSPA6P17066 643 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 MAN1A1P33908 653 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 GPD2P43304 727 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 DR1Q01658 176 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 NFX1Q12986 1120 aaKnown RBP9.72□□□□□ -0.85
ATG4A-202ENST00000345734 PDCLQ13371 301 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 CLUL1Q15846 466 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 CNGA2Q16280 664 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 CCSAPQ6IQ19 270 aaPredicted RBP9.72□□□□□ -0.85
ATG4A-202ENST00000345734 ALKBH2Q6NS38 261 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 ACOT1Q86TX2 421 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 SERINC5Q86VE9 423 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 XYLT1Q86Y38 959 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 RHOT1Q8IXI2 618 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 LRRC52Q8N7C0 313 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 GOLGA6L1Q8N7Z2 621 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 JOSD2Q8TAC2 188 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 CAVIN3Q969G5 261 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 ZFP42Q96MM3 310 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 SENP6Q9GZR1 1112 aaPredicted RBP9.72□□□□□ -0.85
ATG4A-202ENST00000345734 DPH5Q9H2P9 285 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 VIPAS39Q9H9C1 493 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 POLMQ9NP87 494 aaPredicted RBP9.72□□□□□ -0.85
ATG4A-202ENST00000345734 PLA2G2EQ9NZK7 142 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 TSPAN16Q9UKR8 245 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 THSD7BQ9C0I4 1608 aa9.72□□□□□ -0.85
ATG4A-202ENST00000345734 PTGESO14684 152 aa9.71□□□□□ -0.85
ATG4A-202ENST00000345734 FSCN2O14926 492 aa9.71□□□□□ -0.85
ATG4A-202ENST00000345734 TOMM70O94826 608 aa9.71□□□□□ -0.85
ATG4A-202ENST00000345734 HMGCRP04035 888 aa9.71□□□□□ -0.85
ATG4A-202ENST00000345734 PFKMP08237 780 aa9.71□□□□□ -0.85
ATG4A-202ENST00000345734 IGFBP6P24592 240 aaPredicted RBP9.71□□□□□ -0.85
ATG4A-202ENST00000345734 RFC1P35251 1148 aaPredicted RBP9.71□□□□□ -0.85
ATG4A-202ENST00000345734 CTSOP43234 321 aaPredicted RBP9.71□□□□□ -0.85
ATG4A-202ENST00000345734 KCNJ1P48048 391 aa9.71□□□□□ -0.85
ATG4A-202ENST00000345734 MGAT3Q09327 533 aa9.71□□□□□ -0.85
ATG4A-202ENST00000345734 HLTFQ14527 1009 aaKnown RBP eCLIP9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms