RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 B4GALT3O60512 393 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 BEST1O76090 585 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 FAM200BP0CF97 657 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 PCSK1P29120 753 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 ECHS1P30084 290 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 SDC4P31431 198 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 COPS2P61201 443 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 ATP11AP98196 1134 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 PLCB3Q01970 1234 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 ADIGQ0VDE8 80 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 GPNMBQ14956 572 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 CCDC14Q49A88 953 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 RAB6CQ53S08 254 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 PLEKHG4Q58EX7 1191 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 TFDP3Q5H9I0 405 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 CLEC20AQ6ZU45 233 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 ZNF280BQ86YH2 543 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 RSPH1Q8WYR4 309 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 HSPH1Q92598 858 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 KHSRPQ92945 711 aaKnown RBP eCLIP14.04□□□□□ -0.162e-8■□□□□ 8.9
HMGB1-202ENST00000339872 PCED1BQ96HM7 432 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 FAM118BQ9BPY3 351 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 DCLK3Q9C098 648 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 RAB6CQ9H0N0 254 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 FAM114A2Q9NRY5 505 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 hCG_1818297A0A087WSY0 165 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 DPYSL4O14531 572 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 DDHD2O94830 711 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 ECEL1O95672 775 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 PCK1P35558 622 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 CDKN2BP42772 138 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 MAP3K7CLP57077 242 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 RNASELQ05823 741 aaKnown RBP14.04□□□□□ -0.16
HMGB1-202ENST00000339872 ADCY2Q08462 1091 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 DUPD1Q68J44 220 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 DCLRE1AQ6PJP8 1040 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 SLC26A9Q7LBE3 791 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 FAM35AQ86V20 835 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 EIF1ADQ8N9N8 165 aaKnown RBP14.04□□□□□ -0.16
HMGB1-202ENST00000339872 NEUROG2Q9H2A3 272 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 NGRNQ9NPE2 291 aaKnown RBP14.04□□□□□ -0.16
HMGB1-202ENST00000339872 TMEM161AQ9NX61 479 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 HPCAL4Q9UM19 191 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 M0QZQ0 153 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 TJP3O95049 919 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 TRUB2O95900 331 aaKnown RBP14.03□□□□□ -0.16
HMGB1-202ENST00000339872 CYP11A1P05108 521 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 DESP17661 470 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 PTPN7P35236 360 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 NNTQ13423 1086 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 MYCBPAPQ8TBZ2 947 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 FAM172AQ8WUF8 416 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.03□□□□□ -0.16
HMGB1-202ENST00000339872 CCDC114Q96M63 670 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 PEBP4Q96S96 227 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 RTP3Q9BQQ7 232 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 VIPAS39Q9H9C1 493 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 HOMER3Q9NSC5 361 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 TBC1D13Q9NVG8 400 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 DSEQ9UL01 958 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 TET1Q8NFU7 2136 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 C3orf70A6NLC5 250 aaPredicted RBP14.03□□□□□ -0.16
HMGB1-202ENST00000339872 AP1G2O75843 785 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 PAX3P23760 479 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 SCNN1AP37088 669 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 CBX1P83916 185 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 DSC1Q08554 894 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 PPP1R7Q15435 360 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 SPATA18Q8TC71 538 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 SEPT8Q92599 483 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 SCLYQ96I15 445 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 SUSD3Q96L08 255 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 ACBD3Q9H3P7 528 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 LRRC4Q9HBW1 653 aa14.03□□□□□ -0.16
HMGB1-202ENST00000339872 ENPP3O14638 875 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 PRPSAP2O60256 369 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 CAPN15O75808 1086 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 KDELR1P24390 212 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 OR1G1P47890 313 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 KRT17Q04695 432 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 CCNG2Q16589 344 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 OVOS1Q6IE37 1185 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 SCYL2Q6P3W7 929 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 ABI1Q8IZP0 508 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 KCTD6Q8NC69 237 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 SLCO2A1Q92959 643 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 MYLPFQ96A32 169 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 FAM193BQ96PV7 902 aaPredicted RBP14.02□□□□□ -0.16
HMGB1-202ENST00000339872 WBP1LQ9NX94 342 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 KANSL3Q9P2N6 904 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 SNX24Q9Y343 169 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 PCDHB7Q9Y5E2 793 aa14.02□□□□□ -0.16
HMGB1-202ENST00000339872 ARHGEF37A1IGU5 675 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 CD48P09326 243 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 RABGGTBP53611 331 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 INTS6LQ5JSJ4 861 aaKnown RBP14.02□□□□□ -0.17
HMGB1-202ENST00000339872 EFHC1Q5JVL4 640 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 CYP4V2Q6ZWL3 525 aaPredicted RBP14.02□□□□□ -0.17
HMGB1-202ENST00000339872 COLGALT2Q8IYK4 626 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 SIX6OS1Q8N1H7 587 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms