RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 MSS51Q4VC12 460 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 RFWD3Q6PCD5 774 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 DSTYKQ6XUX3 929 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 TAS1R3Q7RTX0 852 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 ZBTB10Q96DT7 871 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 BTBD10Q9BSF8 475 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 SYT17Q9BSW7 474 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 SPATC1LQ9H0A9 340 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 ASCC2Q9H1I8 757 aaPredicted RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 TXNDC16Q9P2K2 825 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 MTO1Q9Y2Z2 717 aaKnown RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 COL24A1Q17RW2 1714 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 FAM237BA0A1B0GVD1 139 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 KRT36O76013 467 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 ALADP13716 330 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 CCNA1P78396 465 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 KHDC1Q4VXA5 237 aaKnown RBP10.97□□□□□ -0.65
COL3A1-202ENST00000317840 WASHC2DQ5SRD0 308 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 DENND1BQ6P3S1 775 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 MAP7D3Q8IWC1 876 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 UBA3Q8TBC4 463 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 THTPAQ9BU02 230 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 ACSS3Q9H6R3 686 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 MAP3K20Q9NYL2 800 aaKnown RBP10.97□□□□□ -0.65
COL3A1-202ENST00000317840 TJP2Q9UDY2 1190 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 RABGEF1Q9UJ41 708 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 SPDYE16A6NNV3 312 aaPredicted RBP10.97□□□□□ -0.65
COL3A1-202ENST00000317840 TM9SF1O15321 606 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 VHLP40337 213 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 BCAR1P56945 870 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 GPX6P59796 221 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 MRPS35P82673 323 aaKnown RBP10.97□□□□□ -0.65
COL3A1-202ENST00000317840 MOGSQ13724 837 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 LRRC36Q1X8D7 754 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 MROH9Q5TGP6 573 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 C1orf146Q5VVC0 180 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 NPNTQ6UXI9 565 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 GBP5Q96PP8 586 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 SMYD3Q9H7B4 428 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 PCMTD2Q9NV79 361 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 CCL15-CCL14A0A0B4J2E2 113 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 TCRBV7S3A2A0A539 114 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 FCHO1O14526 889 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 PRKCBP05771 671 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 PDGFRAP16234 1089 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 RASA2Q15283 850 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 CCL15Q16663 113 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 LRRC38Q5VT99 294 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 CATSPERGQ6ZRH7 1159 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 TTC7BQ86TV6 843 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 ERO1BQ86YB8 467 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 TDRPQ86YL5 185 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 CRLF3Q8IUI8 442 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 SEPT1Q8WYJ6 367 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 TFAP2BQ92481 460 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 NKD2Q969F2 451 aaPredicted RBP10.97□□□□□ -0.65
COL3A1-202ENST00000317840 PORCNQ9H237 461 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 VPS33BQ9H267 617 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 RNF19AQ9NV58 838 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 POLIQ9UNA4 740 aa10.97□□□□□ -0.65
COL3A1-202ENST00000317840 CLGNO14967 610 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 HNRNPCL1O60812 293 aaKnown RBP10.96□□□□□ -0.65
COL3A1-202ENST00000317840 USP2O75604 605 aaPredicted RBP10.96□□□□□ -0.65
COL3A1-202ENST00000317840 LSM8O95777 96 aaKnown RBP10.96□□□□□ -0.65
COL3A1-202ENST00000317840 KCNA2P16389 499 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 KDELR1P24390 212 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 SERPINB4P48594 390 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 MMRN1Q13201 1228 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 CHI3L2Q15782 390 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 EFHC2Q5JST6 749 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 ATG16L1Q676U5 607 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 DENND1AQ8TEH3 1009 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 SLC7A6OSQ96CW6 309 aaPredicted RBP10.96□□□□□ -0.65
COL3A1-202ENST00000317840 CDCA5Q96FF9 252 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 TEPSINQ96N21 525 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 VPS11Q9H270 941 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 ASNSD1Q9NWL6 643 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 GPATCH2LQ9NWQ4 482 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 A0A0B4J269 797 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 TCRBV9S1A1TA0A576 114 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 TXNDC9O14530 226 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 TMEM63AO94886 807 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 ASS1P00966 412 aaKnown RBP10.96□□□□□ -0.65
COL3A1-202ENST00000317840 YY1P25490 414 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 MIPP30301 263 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 RGS7P49802 495 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 CLCN3P51790 818 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 EPHB1P54762 984 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 BLMHQ13867 455 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 TFDP2Q14188 446 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 TAF5Q15542 800 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 PTPN20Q4JDL3 420 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 RASIP1Q5U651 963 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 XRRA1Q6P2D8 792 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 TEX9Q8N6V9 391 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 C2orf69Q8N8R5 385 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 CCDC124Q96CT7 223 aaKnown RBP10.96□□□□□ -0.65
COL3A1-202ENST00000317840 MECRQ9BV79 373 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 KLC2Q9H0B6 622 aa10.96□□□□□ -0.65
COL3A1-202ENST00000317840 RPF1Q9H9Y2 349 aaKnown RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms