RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 TMEM59LQ9UK28 342 aa13.21□□□□□ -0.3
RETREG3-201ENST00000309428 SLC12A4Q9UP95 1085 aa13.21□□□□□ -0.3
RETREG3-201ENST00000309428 LAMA2P24043 3122 aaKnown RBP13.21□□□□□ -0.3
RETREG3-201ENST00000309428 ATXN2Q99700 1313 aaKnown RBP13.2□□□□□ -0.3
RETREG3-201ENST00000309428 C5orf60A6NFR6 353 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 VNN1O95497 513 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 LCP1P13796 627 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 BLMHQ13867 455 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 DBN1Q16643 649 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 PAN2Q504Q3 1202 aaKnown RBP13.2□□□□□ -0.3
RETREG3-201ENST00000309428 PCGF5Q86SE9 256 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 NDRG1Q92597 394 aaKnown RBP13.2□□□□□ -0.3
RETREG3-201ENST00000309428 CAMKK2Q96RR4 588 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 MRPL4Q9BYD3 311 aaKnown RBP13.2□□□□□ -0.3
RETREG3-201ENST00000309428 VPS11Q9H270 941 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 ZDHHC18Q9NUE0 388 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 SMG5Q9UPR3 1016 aaKnown RBP13.2□□□□□ -0.3
RETREG3-201ENST00000309428 NCKAP1LP55160 1127 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 OTUD4Q01804 1114 aaKnown RBP13.2□□□□□ -0.3
RETREG3-201ENST00000309428 SLC1A5Q15758 541 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 SGSM1Q2NKQ1 1148 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 PRAMEF19Q5SWL8 479 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 KDELC2Q7Z4H8 507 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 ZBTB46Q86UZ6 589 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 PAF1Q8N7H5 531 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 DCLK3Q9C098 648 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 LTBP4Q8N2S1 1624 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 TRIM49D1C9J1S8 452 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 RASA2Q15283 850 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 CHI3L2Q15782 390 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 ATF7IP2Q5U623 682 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 ACOT1Q86TX2 421 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 HACE1Q8IYU2 909 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 RASGEF1CQ8N431 466 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 TRIML2Q8N7C3 387 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 FBXO36Q8NEA4 188 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 GPRASP2Q96D09 838 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 SLC5A4Q9NY91 659 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 CHKBQ9Y259 395 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 NCANO14594 1321 aa13.2□□□□□ -0.3
RETREG3-201ENST00000309428 FAM237BA0A1B0GVD1 139 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 PYGBP11216 843 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 PTGIRP43119 386 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 ZACNQ401N2 412 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 FAM47CQ5HY64 1035 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 TTC7BQ86TV6 843 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 ABRAQ8N0Z2 381 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 NME8Q8N427 588 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 CCNYQ8ND76 341 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 USP6NLQ92738 828 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 KIF12Q96FN5 646 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 PAFAH2Q99487 392 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 MINDY3Q9H8M7 445 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 PARVAQ9NVD7 372 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 CES2O00748 559 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 FCHO1O14526 889 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 ADCY3O60266 1144 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 PROSCO94903 275 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 GZMAP12544 262 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 AKAP5P24588 427 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 NR1H3Q13133 447 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 PPP1R15BQ5SWA1 713 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 VSTM1Q6UX27 236 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 OTOAQ7RTW8 1153 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 RFWD2Q8NHY2 731 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 ATP2A3Q93084 1043 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 SPATC1LQ9H0A9 340 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 RAB6BQ9NRW1 208 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.19□□□□□ -0.3
RETREG3-201ENST00000309428 WASF2Q9Y6W5 498 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 KRT37O76014 449 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 GSTT1P30711 240 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 ABCG1P45844 678 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 HIC1Q14526 733 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 WDR75Q8IWA0 830 aaKnown RBP13.19□□□□□ -0.3
RETREG3-201ENST00000309428 SCUBE3Q8IX30 993 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 AGAP3Q96P47 875 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 B3GNT5Q9BYG0 378 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 RNPEPQ9H4A4 650 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 KIAA1586Q9HCI6 787 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 ACSS2Q9NR19 701 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 ARL8BQ9NVJ2 186 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 IL1RAPL1Q9NZN1 696 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 WHRNQ9P202 907 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 XPO7Q9UIA9 1087 aaKnown RBP13.19□□□□□ -0.3
RETREG3-201ENST00000309428 APOBEC2Q9Y235 224 aaKnown RBP13.19□□□□□ -0.3
RETREG3-201ENST00000309428 LRCH1Q9Y2L9 728 aa13.19□□□□□ -0.3
RETREG3-201ENST00000309428 MAGEA13PA6NCF6 341 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 XPO1O14980 1071 aaKnown RBP13.18□□□□□ -0.3
RETREG3-201ENST00000309428 ZMPSTE24O75844 475 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 SMNDC1O75940 238 aaKnown RBP eCLIP13.18□□□□□ -0.3
RETREG3-201ENST00000309428 PDGFRAP16234 1089 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 AQP5P55064 265 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 CRADDP78560 199 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 TCHHL1Q5QJ38 904 aaPredicted RBP13.18□□□□□ -0.3
RETREG3-201ENST00000309428 ABHD15Q6UXT9 468 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 SLC9A9Q8IVB4 645 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 AFG1LQ8WV93 481 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 SCYL1Q96KG9 808 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 LRGUKQ96M69 825 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms